Rh1AG408000

GMC oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010788
Physical Location & Seq
Forward (+)
63581443 .. 63582758
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG408000.1

Sequence Viewer

Length: 1146 bp
ATGGATTTCAGATGGTGGAGAAGATCATTCGCTGGAGCTTTTGTTTCTTGGGTTTTCTTCTTTCTTCGCTTTTCTTGCTCAGACAAAGCTCCAGACTTCACATTTGTGAAAGAAGCAACGTCGGCTCCGCCAGTGATTTCCTACGACTACATAATTATCGGTGGCGGTACTGCTGGGTGTCCTTTAGCTGCTACTCTCTCTCACGGCGGCGCAACCGTCTTAGTCCTGGAACGTGGTGGCTCGCCCTACACCAACCCTAACATCACCAACATTGGCAACTTCGCTTCTGTTCTTCTGGACAGGTCTCCCACTTCTCCAGCACAGCCCTTCACCTCCGAGGATGGTGTCTACAATGCAAGGGCACGCATCCTCGGGGGCGGTTCGGCCGTCAACGCCGGGTTTTACTCGCTTGCCAGCACTCACTACATCAAGGAAATGGGCTGGAACCAAAAAATGGTCGAACAGGCTTATGAATGGGTTGAGAAAGTTGTGGCATTTCAACCTCCCTTGATGGAGTGGCAGACTGCTCTCAGAGATGGCTTGCTTGAAGTCGGAGTGTTGCCGAATAACGGCTTTACCTACAACCATTTGTACGGTACTAAAGTTGGAGGTACCATTTTCGACAAAGAAGGTCATAGACACACCGCCGCGGATTTGCTTCAGTATGCAAACCCCAGCAGTATCACCGTCTATTTGCATGCCATTGTGCACAAGATCTTGTTTAGACACATTCCCGGAAGGGCAAGGCCGCAAGCGTATGGTGTGATTTATAAAGATGCAAATGGAGTGAGGCACCAAGCTTACCTAAAGAATAACTCCAAGAACGAGATTATATTAACAGCTGGAGCTATTGGGAGCCCTCAGCTTCTGATGCTGAGTGGTATTGGGCCCGGTTACCATCTTCGGACCCACGGTATTCAGGTGGTGGTGGATCAGCCCTTGGTGGGGCAGGGAATGGCTGATAACCCAATGAACGTCCTCCTCATTCCGTCACCTCTGCCGGTTGAGGTGTCTCTGGTTCAAGTTGTGGGCATAACCAAGTTTGATACCTACATTGAAGGAGCTAGCGGACTCAGCTTGGCTTATCCTTTGGCTCGAAGGCTTGCTAAAAGCTTTAGGCTCATCTTGAATCAGGTTAGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

381

Amino Acids

41.58

Weight (kDa)

9.04

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 48 - 323 7.3e-17 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010788)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56060 AT5G51930 AT5G51930 AT5G51950 AT5G51950 AT5G51950
fragaria_vesca FvH4_7g28850
malus_domestica MD01G1194300.v1.1
prunus_persica Prupe.2G288400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376521
rosa_laevigata RLG00000026604
rosa_multiflora Rmu_sc0001308.1_g000024 Rmu_sc0016049.1_g000002
rosa_roxburghii Rroxscaffold_4G00282040
rosa_rugosa Rorug01G0396200
rosa_samantha Rh1AG408000 Rh1BG372000 Rh1CG385800 Rh1DG403000
rosa_wichuraiana Rw1G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
Acc65I GGTACC 1 cut(s) 611
AccB1I GGYRCC 2 cut(s) 611, 792
AccB7I CCANNNNNTGG 1 cut(s) 454
AccI GTMKAC 1 cut(s) 348
AccII CGCG 1 cut(s) 650
AciI CCGC 9 cut(s) 128, 165, 207, 378, 645, 648, 650, 749, 1068
AclWI GGATC 1 cut(s) 939
AcoI YGGCCR 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 644
AfaI GTAC 4 cut(s) 169, 593, 598, 613
AfiI CCNNNNNNNGG 4 cut(s) 454, 569, 944, 945
AgsI TTSAA 5 cut(s) 500, 548, 1022, 1058, 1129
AjnI CCWGG 1 cut(s) 225
AleI CACNNNNGTG 1 cut(s) 104
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 2 cut(s) 309, 1017
Alw44I GTGCAC 1 cut(s) 707
AlwI GGATC 1 cut(s) 939
AlwNI CAGNNNCTG 1 cut(s) 868
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 3 cut(s) 384, 746, 887
ApaI GGGCCC 1 cut(s) 891
ApaLI GTGCAC 1 cut(s) 707
ApeKI GCWGC 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp718I GGTACC 1 cut(s) 611
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 3 cut(s) 887, 888, 906
AsuC2I CCSGG 3 cut(s) 397, 735, 891
AsuHPI GGTGA 4 cut(s) 256, 322, 676, 984
AsuNHI GCTAGC 1 cut(s) 1064
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 906
BaeGI GKGCMC 3 cut(s) 364, 711, 891
BaeI ACNNNNGTAYC 2 cut(s) 588, 621
BanI GGYRCC 2 cut(s) 611, 792
BanII GRGCYC 2 cut(s) 860, 891
Bbv12I GWGCWC 1 cut(s) 711
BbvCI CCTCAGC 1 cut(s) 861
BbvI GCAGC 1 cut(s) 175
BccI CCATC 5 cut(s) 6, 335, 505, 530, 906
BceAI ACGGC 3 cut(s) 220, 371, 586
BciT130I CCWGG 1 cut(s) 227
BcnI CCSGG 3 cut(s) 397, 735, 891
BcoDI GTCTC 2 cut(s) 309, 1017
BfaI CTAG 1 cut(s) 1065
BglII AGATCT 1 cut(s) 714
BisI GCNGC 4 cut(s) 189, 208, 648, 749
BlsI GCNGC 4 cut(s) 190, 209, 649, 750
Bme1390I CCNGG 4 cut(s) 227, 397, 735, 891
Bme18I GGWCC 1 cut(s) 906
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 3 cut(s) 887, 888, 906
BmiI GGNNCC 7 cut(s) 126, 446, 613, 794, 857, 889, 908
BmrFI CCNGG 4 cut(s) 227, 397, 735, 891
BmsI GCATC 3 cut(s) 375, 766, 861
BmtI GCTAGC 1 cut(s) 1068
BpmI CTGGAG 4 cut(s) 54, 75, 300, 864
Bpu10I CCTNAGC 1 cut(s) 861
BpuMI CCSGG 3 cut(s) 397, 735, 891
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 5 cut(s) 336, 370, 648, 910, 939
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 109, 139
Bsc4I CCNNNNNNNGG 4 cut(s) 454, 569, 944, 945
Bse118I RCCGGY 1 cut(s) 1000
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 5 cut(s) 336, 370, 648, 910, 939
BseGI GGATG 2 cut(s) 346, 366
BseLI CCNNNNNNNGG 4 cut(s) 454, 569, 944, 945
BseMII CTCAG 5 cut(s) 93, 544, 866, 875, 1087
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 971
BseSI GKGCMC 3 cut(s) 364, 711, 891
BseX3I CGGCCG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 2 cut(s) 173, 674
Bsh1236I CGCG 1 cut(s) 650
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 3 cut(s) 386, 748, 889
BshNI GGYRCC 2 cut(s) 611, 792
BsiEI CGRYCG 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 711
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 4 cut(s) 396, 735, 891, 1001
BslI CCNNNNNNNGG 4 cut(s) 454, 569, 944, 945
BsmAI GTCTC 2 cut(s) 309, 1017
BsnI GGCC 3 cut(s) 386, 748, 889
Bso31I GGTCTC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 371
Bsp120I GGGCCC 1 cut(s) 887
Bsp1286I GDGCHC 4 cut(s) 364, 711, 860, 891
Bsp143I GATC 3 cut(s) 23, 714, 931
BspACI CCGC 9 cut(s) 128, 165, 207, 378, 645, 648, 650, 749, 1068
BspANI GGCC 3 cut(s) 386, 748, 889
BspCNI CTCAG 5 cut(s) 92, 543, 867, 874, 1086
BspFNI CGCG 1 cut(s) 650
BspLI GGNNCC 7 cut(s) 126, 446, 613, 794, 857, 889, 908
BspOI GCTAGC 1 cut(s) 1068
BspPI GGATC 1 cut(s) 939
BspT107I GGYRCC 2 cut(s) 611, 792
BspTNI GGTCTC 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 1000
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 1000
BssECI CCNNGG 5 cut(s) 336, 370, 648, 910, 939
BssMI GATC 3 cut(s) 23, 714, 931
BssT1I CCWWGG 1 cut(s) 939
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 4 cut(s) 217, 596, 688, 914
BstC8I GCNNGC 9 cut(s) 242, 364, 411, 415, 542, 699, 753, 1066, 1104
BstDEI CTNAG 6 cut(s) 79, 220, 530, 861, 875, 1073
BstDSI CCRYGG 2 cut(s) 648, 910
BstEII GGTNACC 1 cut(s) 893
BstF5I GGATG 2 cut(s) 346, 366
BstFNI CGCG 1 cut(s) 650
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 3 cut(s) 26, 717, 934
BstMAI GTCTC 2 cut(s) 309, 1017
BstMBI GATC 3 cut(s) 23, 714, 931
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 5 cut(s) 75, 122, 392, 871, 1074
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 701
BstPI GGTNACC 1 cut(s) 893
BstSCI CCNGG 4 cut(s) 225, 395, 733, 889
BstSLI GKGCMC 3 cut(s) 364, 711, 891
BstUI CGCG 1 cut(s) 650
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BstZI CGGCCG 1 cut(s) 384
BsuRI GGCC 3 cut(s) 386, 748, 889
BtgI CCRYGG 2 cut(s) 648, 910
BtsCI GGATG 2 cut(s) 346, 366
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 9 cut(s) 242, 364, 411, 415, 542, 699, 753, 1066, 1104
CaiI CAGNNNCTG 1 cut(s) 868
CfoI GCGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 1000
Cfr13I GGNCC 3 cut(s) 887, 888, 906
Cfr42I CCGCGG 1 cut(s) 651
Csp6I GTAC 4 cut(s) 168, 592, 597, 612
CviAII CATG 1 cut(s) 698
CviQI GTAC 4 cut(s) 168, 592, 597, 612
DdeI CTNAG 6 cut(s) 79, 220, 530, 861, 875, 1073
DpnI GATC 3 cut(s) 25, 716, 933
DpnII GATC 3 cut(s) 23, 714, 931
EaeI YGGCCR 1 cut(s) 384
EagI CGGCCG 1 cut(s) 384
EciI GGCGGA 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 939
Eco24I GRGCYC 2 cut(s) 860, 891
Eco31I GGTCTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 906
Eco52I CGGCCG 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 371
Eco91I GGTNACC 1 cut(s) 893
EcoO65I GGTNACC 1 cut(s) 893
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 939
EcoT38I GRGCYC 2 cut(s) 860, 891
ErhI CCWWGG 1 cut(s) 939
FaeI CATG 1 cut(s) 701
FatI CATG 1 cut(s) 697
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 4 cut(s) 189, 208, 648, 749
FokI GGATG 2 cut(s) 353, 353
FriOI GRGCYC 2 cut(s) 860, 891
Fsp4HI GCNGC 4 cut(s) 189, 208, 648, 749
FspBI CTAG 1 cut(s) 1065
GlaI GCGC 1 cut(s) 211
GluI GCNGC 4 cut(s) 189, 208, 648, 749
GsaI CCCAGC 2 cut(s) 177, 678
GsuI CTGGAG 4 cut(s) 54, 75, 300, 864
HaeIII GGCC 3 cut(s) 386, 748, 889
HapII CCGG 4 cut(s) 396, 735, 891, 1001
HhaI GCGC 1 cut(s) 212
Hin1II CATG 1 cut(s) 701
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 2 cut(s) 798, 1111
HinfI GANTC 2 cut(s) 1071, 1129
HpaII CCGG 4 cut(s) 396, 735, 891, 1001
HphI GGTGA 4 cut(s) 256, 322, 676, 984
Hpy166II GTNNAC 3 cut(s) 349, 391, 709
Hpy188I TCNGA 7 cut(s) 11, 82, 337, 533, 554, 870, 906
Hpy188III TCNNGA 3 cut(s) 92, 296, 1126
Hpy8I GTNNAC 3 cut(s) 349, 391, 709
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 5 cut(s) 337, 623, 732, 1052, 1092
HpyCH4III ACNGT 4 cut(s) 217, 596, 688, 914
HpyCH4IV ACGT 3 cut(s) 119, 232, 975
HpyCH4V TGCA 5 cut(s) 356, 668, 697, 709, 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 122, 392, 871, 1074
HpyF3I CTNAG 6 cut(s) 79, 220, 530, 861, 875, 1073
HpySE526I ACGT 3 cut(s) 119, 232, 975
Hsp92II CATG 1 cut(s) 701
HspAI GCGC 1 cut(s) 210
KpnI GGTACC 1 cut(s) 615
KspI CCGCGG 1 cut(s) 651
Kzo9I GATC 3 cut(s) 23, 714, 931
LmnI GCTCC 6 cut(s) 35, 94, 130, 845, 855, 1061
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 3 cut(s) 375, 766, 861
MaeI CTAG 1 cut(s) 1065
MaeII ACGT 3 cut(s) 119, 232, 975
MaeIII GTNAC 2 cut(s) 893, 990
MalI GATC 3 cut(s) 25, 716, 933
MboI GATC 3 cut(s) 23, 714, 931
MboII GAAGA 5 cut(s) 33, 49, 56, 284, 893
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 4 cut(s) 364, 711, 860, 891
MluCI AATT 1 cut(s) 153
MlyI GAGTC 1 cut(s) 1065
MmeI TCCRAC 2 cut(s) 532, 586
MseI TTAA 1 cut(s) 836
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 650, 842
MspI CCGG 4 cut(s) 396, 735, 891, 1001
MspR9I CCNGG 4 cut(s) 227, 397, 735, 891
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 650
MwoI GCNNNNNNNGC 5 cut(s) 75, 122, 392, 871, 1074
NciI CCSGG 3 cut(s) 397, 735, 891
NdeII GATC 3 cut(s) 23, 714, 931
NheI GCTAGC 1 cut(s) 1064
NlaIII CATG 1 cut(s) 701
NlaIV GGNNCC 7 cut(s) 126, 446, 613, 794, 857, 889, 908
NmuCI GTSAC 1 cut(s) 990
NspI RCATGY 1 cut(s) 701
OliI CACNNNNGTG 1 cut(s) 104
PaeI GCATGC 1 cut(s) 701
PfeI GAWTC 1 cut(s) 1129
PflMI CCANNNNNTGG 1 cut(s) 454
PfoI TCCNGGA 2 cut(s) 225, 733
PkrI GCNGC 4 cut(s) 190, 209, 649, 750
PleI GAGTC 1 cut(s) 1065
PpsI GAGTC 1 cut(s) 1065
PsiI TTATAA 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 893
PspFI CCCAGC 2 cut(s) 173, 674
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 7 cut(s) 126, 446, 613, 794, 857, 889, 908
PspOMI GGGCCC 1 cut(s) 887
PspPI GGNCC 3 cut(s) 887, 888, 906
PstNI CAGNNNCTG 1 cut(s) 868
PsuI RGATCY 1 cut(s) 714
PvuII CAGCTG 1 cut(s) 842
RsaI GTAC 4 cut(s) 169, 593, 598, 613
RsaNI GTAC 4 cut(s) 168, 592, 597, 612
RseI CAYNNNNRTG 1 cut(s) 104
SacII CCGCGG 1 cut(s) 651
SaqAI TTAA 1 cut(s) 836
SatI GCNGC 4 cut(s) 189, 208, 648, 749
Sau3AI GATC 3 cut(s) 23, 714, 931
Sau96I GGNCC 3 cut(s) 887, 888, 906
SchI GAGTC 1 cut(s) 1065
ScrFI CCNGG 4 cut(s) 227, 397, 735, 891
SduI GDGCHC 4 cut(s) 364, 711, 860, 891
SfaNI GCATC 3 cut(s) 375, 766, 861
Sfr303I CCGCGG 1 cut(s) 651
SgrBI CCGCGG 1 cut(s) 651
SinI GGWCC 1 cut(s) 906
SmiMI CAYNNNNRTG 1 cut(s) 104
SphI GCATGC 1 cut(s) 701
Sse9I AATT 1 cut(s) 153
SsiI CCGC 9 cut(s) 128, 165, 207, 378, 645, 648, 650, 749, 1068
SspMI CTAG 1 cut(s) 1065
StyD4I CCNGG 4 cut(s) 225, 395, 733, 889
StyI CCWWGG 1 cut(s) 939
TaaI ACNGT 4 cut(s) 217, 596, 688, 914
TaiI ACGT 3 cut(s) 122, 235, 978
TaqI TCGA 3 cut(s) 459, 621, 1096
TasI AATT 1 cut(s) 153
TauI GCSGC 3 cut(s) 210, 650, 751
TfiI GAWTC 1 cut(s) 1129
Tru1I TTAA 1 cut(s) 836
Tru9I TTAA 1 cut(s) 836
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 990
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 990
TspDTI ATGAA 3 cut(s) 486, 986, 1131
TspGWI ACGGA 1 cut(s) 978
TspRI CASTG 1 cut(s) 138
Van91I CCANNNNNTGG 1 cut(s) 454
VneI GTGCAC 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 906
XceI RCATGY 1 cut(s) 701
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.