Rh1CG385800

GMC oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010788
Physical Location & Seq
Reverse (-)
65615797 .. 65617362
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG385800.1

Sequence Viewer

Length: 1056 bp
ATGATTGGTGTTGCAGATGGTGCCACTCCAGACTTCACATTTGTGAAAGAAGCAACGTCGGCTCCGCCAGTGATTTCCTACGACTACATAATTATCGGCGGCGGTACTGCTGGGTGTCCTTTAGCTGCTACTCTCTCTCACGGCGGCGCAACCGTCTTAGTCCTGGAACGTGGTGGCTCACCCTACACAAATCCTAACATCACCAACATTGACAACTTCGCTTCTGTTCTTCTGGACAGGTCTCCCACTTCTCCGGCACAGGCCTTCACCTCCGAGGATGGTGTCTACAATGCAAGGGCACGCATCCTCGGGGGCGGCTCGGCCGTCAACGCCGGGTTTTACTCGCGTGCCAGCACGCACTACATCAAGGAAATGGGCTGGAACCAAAAAATGGTCGAACAGGCTTATGAATGGGTTGAGAAAGTTGTGGCATTTCATCCTCCCTTGATGCAGTGGCAGACTGCTCTCAGAGATGGCTTGCTTGAAGTCGGAGTGTTGCCGAATAACGGCTTTACCTACAACCATTTGTACGGTACTAAAGTCGGAGGTACCATTTTCGACAAAGAAGGTCATAGACACACCGCCGCGGATTTGCTTCAGTATGCAAACCCCAGCAGTATCACTGTCTATTTGCATGCCATTGTGCACAAGATCTTGTTTAGACACATTCCCGGAAGGGCAAGGCCGCAAGCTTATGGTGTGATTTATACAGATGCAAATGGAGTGAGGCACCAAGCTTACCTAAAGAATAACTCCAAGAACGAGATTATATTAACAGCTGGAGCTATTGGGAGCCCTCAGCTTCTGATGCTGAGTGGTATTGGGCCGGGTTACCATCTTCGGACCCACGGTATTCAGGTGGTGGTGGATCAGCCCTTGGTGGGGCAGGGAATGGCTGATAACCCAATGAACGTCCTCCTCATTCCGTCACCTCTGCCGGTTGAGGTGTCTCTGGTTCAAGTTGTGGGCATAACCAAGTTTGATACCTACATTGAAGGAGCTAGCGGACTCAGCTTGGCTTATCCTTTGGCTCGAAGGCTTGCTAAAAGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

351

Amino Acids

37.64

Weight (kDa)

7.22

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 27 - 302 1.1e-18 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010788)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56060 AT5G51930 AT5G51930 AT5G51950 AT5G51950 AT5G51950
fragaria_vesca FvH4_7g28850
malus_domestica MD01G1194300.v1.1
prunus_persica Prupe.2G288400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376521
rosa_laevigata RLG00000026604
rosa_multiflora Rmu_sc0001308.1_g000024 Rmu_sc0016049.1_g000002
rosa_roxburghii Rroxscaffold_4G00282040
rosa_rugosa Rorug01G0396200
rosa_samantha Rh1AG408000 Rh1BG372000 Rh1CG385800 Rh1DG403000
rosa_wichuraiana Rw1G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 3 cut(s) 20, 548, 729
AccB7I CCANNNNNTGG 1 cut(s) 391
AccI GTMKAC 1 cut(s) 285
AccII CGCG 2 cut(s) 346, 587
AclWI GGATC 1 cut(s) 876
AcoI YGGCCR 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 581
AfaI GTAC 4 cut(s) 106, 530, 535, 550
AfiI CCNNNNNNNGG 4 cut(s) 391, 506, 881, 882
AgsI TTSAA 3 cut(s) 485, 959, 995
AjnI CCWGG 1 cut(s) 162
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 9 cut(s) 125, 692, 737, 779, 785, 802, 1001, 1014, 1050
AluI AGCT 9 cut(s) 125, 692, 737, 779, 785, 802, 1001, 1014, 1050
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 2 cut(s) 246, 954
Alw44I GTGCAC 1 cut(s) 644
AlwI GGATC 1 cut(s) 876
AlwNI CAGNNNCTG 1 cut(s) 805
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 4 cut(s) 261, 321, 683, 824
ApaLI GTGCAC 1 cut(s) 644
ApeKI GCWGC 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
Asp718I GGTACC 1 cut(s) 548
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 824, 843
AsuC2I CCSGG 3 cut(s) 334, 672, 828
AsuHPI GGTGA 4 cut(s) 171, 193, 259, 921
AsuNHI GCTAGC 1 cut(s) 1001
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 843
BaeGI GKGCMC 2 cut(s) 301, 648
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BanI GGYRCC 3 cut(s) 20, 548, 729
BanII GRGCYC 1 cut(s) 797
Bbv12I GWGCWC 1 cut(s) 648
BbvCI CCTCAGC 1 cut(s) 798
BbvI GCAGC 1 cut(s) 112
BccI CCATC 4 cut(s) 11, 272, 467, 843
BceAI ACGGC 3 cut(s) 157, 308, 523
BciT130I CCWGG 1 cut(s) 164
BcnI CCSGG 3 cut(s) 334, 672, 828
BcoDI GTCTC 2 cut(s) 246, 954
BfaI CTAG 1 cut(s) 1002
BglII AGATCT 1 cut(s) 651
BisI GCNGC 6 cut(s) 100, 126, 145, 316, 585, 686
BlsI GCNGC 6 cut(s) 101, 127, 146, 317, 586, 687
Bme1390I CCNGG 4 cut(s) 164, 334, 672, 828
Bme18I GGWCC 1 cut(s) 843
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 824, 843
BmiI GGNNCC 7 cut(s) 22, 63, 383, 550, 731, 794, 845
BmrFI CCNGG 4 cut(s) 164, 334, 672, 828
BmsI GCATC 4 cut(s) 312, 438, 703, 798
BmtI GCTAGC 1 cut(s) 1005
BpmI CTGGAG 2 cut(s) 12, 801
Bpu10I CCTNAGC 1 cut(s) 798
BpuMI CCSGG 3 cut(s) 334, 672, 828
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 5 cut(s) 273, 307, 585, 847, 876
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 4 cut(s) 391, 506, 881, 882
Bse118I RCCGGY 1 cut(s) 937
Bse1I ACTGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 5 cut(s) 273, 307, 585, 847, 876
BseGI GGATG 3 cut(s) 283, 303, 436
BseLI CCNNNNNNNGG 4 cut(s) 391, 506, 881, 882
BseMII CTCAG 4 cut(s) 481, 803, 812, 1024
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 908
BseSI GKGCMC 2 cut(s) 301, 648
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 2 cut(s) 110, 611
Bsh1236I CGCG 2 cut(s) 346, 587
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 4 cut(s) 263, 323, 685, 826
BshNI GGYRCC 3 cut(s) 20, 548, 729
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 648
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 5 cut(s) 254, 333, 672, 827, 938
BslI CCNNNNNNNGG 4 cut(s) 391, 506, 881, 882
BsmAI GTCTC 2 cut(s) 246, 954
BsnI GGCC 4 cut(s) 263, 323, 685, 826
Bso31I GGTCTC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 3 cut(s) 301, 648, 797
Bsp143I GATC 2 cut(s) 651, 868
BspANI GGCC 4 cut(s) 263, 323, 685, 826
BspCNI CTCAG 4 cut(s) 480, 804, 811, 1023
BspFNI CGCG 2 cut(s) 346, 587
BspLI GGNNCC 7 cut(s) 22, 63, 383, 550, 731, 794, 845
BspOI GCTAGC 1 cut(s) 1005
BspPI GGATC 1 cut(s) 876
BspT107I GGYRCC 3 cut(s) 20, 548, 729
BspTNI GGTCTC 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 937
BsrI ACTGG 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 937
BssECI CCNNGG 5 cut(s) 273, 307, 585, 847, 876
BssMI GATC 2 cut(s) 651, 868
BssT1I CCWWGG 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 4 cut(s) 154, 533, 625, 851
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 9 cut(s) 301, 348, 352, 356, 479, 636, 690, 1003, 1041
BstDEI CTNAG 5 cut(s) 157, 467, 798, 812, 1010
BstDSI CCRYGG 2 cut(s) 585, 847
BstEII GGTNACC 1 cut(s) 830
BstF5I GGATG 3 cut(s) 283, 303, 436
BstFNI CGCG 2 cut(s) 346, 587
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 2 cut(s) 654, 871
BstMAI GTCTC 2 cut(s) 246, 954
BstMBI GATC 2 cut(s) 651, 868
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 5 cut(s) 20, 59, 329, 808, 1011
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 638
BstPI GGTNACC 1 cut(s) 830
BstSCI CCNGG 4 cut(s) 162, 332, 670, 826
BstSLI GKGCMC 2 cut(s) 301, 648
BstUI CGCG 2 cut(s) 346, 587
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 651
BstYI RGATCY 1 cut(s) 651
BstZI CGGCCG 1 cut(s) 321
BsuRI GGCC 4 cut(s) 263, 323, 685, 826
BtgI CCRYGG 2 cut(s) 585, 847
BtsCI GGATG 3 cut(s) 283, 303, 436
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 3 cut(s) 75, 458, 621
Cac8I GCNNGC 9 cut(s) 301, 348, 352, 356, 479, 636, 690, 1003, 1041
CaiI CAGNNNCTG 1 cut(s) 805
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 937
Cfr13I GGNCC 2 cut(s) 824, 843
Cfr42I CCGCGG 1 cut(s) 588
Csp6I GTAC 4 cut(s) 105, 529, 534, 549
CviAII CATG 1 cut(s) 635
CviQI GTAC 4 cut(s) 105, 529, 534, 549
DdeI CTNAG 5 cut(s) 157, 467, 798, 812, 1010
DpnI GATC 2 cut(s) 653, 870
DpnII GATC 2 cut(s) 651, 868
EaeI YGGCCR 1 cut(s) 321
EagI CGGCCG 1 cut(s) 321
EciI GGCGGA 1 cut(s) 54
EclXI CGGCCG 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 876
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 797
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 843
Eco52I CGGCCG 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 581
Eco88I CYCGRG 1 cut(s) 308
Eco91I GGTNACC 1 cut(s) 830
EcoO65I GGTNACC 1 cut(s) 830
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 876
EcoT38I GRGCYC 1 cut(s) 797
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 1 cut(s) 638
FaiI YATR 9 cut(s) 89, 408, 573, 603, 636, 696, 708, 770, 971
FatI CATG 1 cut(s) 634
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 6 cut(s) 100, 126, 145, 316, 585, 686
FokI GGATG 3 cut(s) 290, 290, 423
FriOI GRGCYC 1 cut(s) 797
Fsp4HI GCNGC 6 cut(s) 100, 126, 145, 316, 585, 686
FspBI CTAG 1 cut(s) 1002
GlaI GCGC 1 cut(s) 148
GluI GCNGC 6 cut(s) 100, 126, 145, 316, 585, 686
GsaI CCCAGC 2 cut(s) 114, 615
GsuI CTGGAG 2 cut(s) 12, 801
HaeIII GGCC 4 cut(s) 263, 323, 685, 826
HapII CCGG 5 cut(s) 254, 333, 672, 827, 938
HhaI GCGC 1 cut(s) 149
Hin1II CATG 1 cut(s) 638
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 2 cut(s) 690, 735
HinfI GANTC 1 cut(s) 1008
HpaII CCGG 5 cut(s) 254, 333, 672, 827, 938
HphI GGTGA 4 cut(s) 171, 193, 259, 921
Hpy166II GTNNAC 3 cut(s) 286, 328, 646
Hpy188I TCNGA 6 cut(s) 274, 470, 491, 545, 807, 843
Hpy188III TCNNGA 2 cut(s) 29, 233
Hpy8I GTNNAC 3 cut(s) 286, 328, 646
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 5 cut(s) 274, 560, 669, 989, 1029
HpyCH4III ACNGT 4 cut(s) 154, 533, 625, 851
HpyCH4IV ACGT 3 cut(s) 56, 169, 912
HpyCH4V TGCA 7 cut(s) 14, 293, 451, 605, 634, 646, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 59, 329, 808, 1011
HpyF3I CTNAG 5 cut(s) 157, 467, 798, 812, 1010
HpySE526I ACGT 3 cut(s) 56, 169, 912
Hsp92II CATG 1 cut(s) 638
HspAI GCGC 1 cut(s) 147
KpnI GGTACC 1 cut(s) 552
KspI CCGCGG 1 cut(s) 588
Kzo9I GATC 2 cut(s) 651, 868
LmnI GCTCC 5 cut(s) 67, 782, 792, 998, 1055
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 4 cut(s) 312, 438, 703, 798
MaeI CTAG 1 cut(s) 1002
MaeII ACGT 3 cut(s) 56, 169, 912
MaeIII GTNAC 2 cut(s) 830, 927
MalI GATC 2 cut(s) 653, 870
MboI GATC 2 cut(s) 651, 868
MboII GAAGA 2 cut(s) 221, 830
MflI RGATCY 1 cut(s) 651
MhlI GDGCHC 3 cut(s) 301, 648, 797
MluCI AATT 1 cut(s) 90
MlyI GAGTC 1 cut(s) 1002
MmeI TCCRAC 2 cut(s) 469, 523
MseI TTAA 1 cut(s) 773
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 2 cut(s) 587, 779
MspI CCGG 5 cut(s) 254, 333, 672, 827, 938
MspR9I CCNGG 4 cut(s) 164, 334, 672, 828
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 2 cut(s) 346, 587
MwoI GCNNNNNNNGC 5 cut(s) 20, 59, 329, 808, 1011
NciI CCSGG 3 cut(s) 334, 672, 828
NdeII GATC 2 cut(s) 651, 868
NheI GCTAGC 1 cut(s) 1001
NlaIII CATG 1 cut(s) 638
NlaIV GGNNCC 7 cut(s) 22, 63, 383, 550, 731, 794, 845
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 927
NspI RCATGY 1 cut(s) 638
OliI CACNNNNGTG 1 cut(s) 41
PaeI GCATGC 1 cut(s) 638
PceI AGGCCT 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 391
PfoI TCCNGGA 2 cut(s) 162, 670
PkrI GCNGC 6 cut(s) 101, 127, 146, 317, 586, 687
PleI GAGTC 1 cut(s) 1002
PpsI GAGTC 1 cut(s) 1002
Psp6I CCWGG 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 830
PspFI CCCAGC 2 cut(s) 110, 611
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 7 cut(s) 22, 63, 383, 550, 731, 794, 845
PspPI GGNCC 2 cut(s) 824, 843
PstNI CAGNNNCTG 1 cut(s) 805
PsuI RGATCY 1 cut(s) 651
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 4 cut(s) 106, 530, 535, 550
RsaNI GTAC 4 cut(s) 105, 529, 534, 549
RseI CAYNNNNRTG 1 cut(s) 41
SacII CCGCGG 1 cut(s) 588
SaqAI TTAA 1 cut(s) 773
SatI GCNGC 6 cut(s) 100, 126, 145, 316, 585, 686
Sau3AI GATC 2 cut(s) 651, 868
Sau96I GGNCC 2 cut(s) 824, 843
SchI GAGTC 1 cut(s) 1002
ScrFI CCNGG 4 cut(s) 164, 334, 672, 828
SduI GDGCHC 3 cut(s) 301, 648, 797
SfaNI GCATC 4 cut(s) 312, 438, 703, 798
Sfr303I CCGCGG 1 cut(s) 588
SgrBI CCGCGG 1 cut(s) 588
SinI GGWCC 1 cut(s) 843
SmiMI CAYNNNNRTG 1 cut(s) 41
SphI GCATGC 1 cut(s) 638
Sse9I AATT 1 cut(s) 90
SseBI AGGCCT 1 cut(s) 263
SspMI CTAG 1 cut(s) 1002
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 4 cut(s) 162, 332, 670, 826
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 4 cut(s) 154, 533, 625, 851
TaiI ACGT 3 cut(s) 59, 172, 915
TaqI TCGA 3 cut(s) 396, 558, 1033
TasI AATT 1 cut(s) 90
TauI GCSGC 5 cut(s) 102, 147, 318, 587, 688
Tru1I TTAA 1 cut(s) 773
Tru9I TTAA 1 cut(s) 773
TscAI CASTG 3 cut(s) 75, 458, 628
TseFI GTSAC 1 cut(s) 927
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 927
TspDTI ATGAA 3 cut(s) 423, 425, 923
TspGWI ACGGA 1 cut(s) 915
TspRI CASTG 3 cut(s) 75, 458, 628
Van91I CCANNNNNTGG 1 cut(s) 391
VneI GTGCAC 1 cut(s) 644
VpaK11BI GGWCC 1 cut(s) 843
XceI RCATGY 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.