RchiOBHm_Chr1g0382821

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
67450062 .. 67450546
485 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGGCCATGAGTACTATCAATGTGTCACTGCCTTTCGTCGTTGCGGGCCTTGCGGCTGGGGCTGGGATTTACTTCCTTGACAGAAACCATTACAAGCAAAAGGAAATCAGAGGTGGGATTCGAACATCTATTGAAAATTTCATGACACAAGCCAAGGTGGAGGTGAGCAACACACAGATGCCAAAGTTGGCACCTCAATTTGATGGGTTGGACTCATTCGAAACCTTGGTGGTTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.72

Weight (kDa)

8.12

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018088)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32870
malus_domestica MD07G1298600.v1.1
pyrus_communis pycom07g27100
rosa_chinensis RchiOBHm_Chr1g0382821
rosa_roxburghii Rroxscaffold_4G00277870
rosa_rugosa Rorug01G0436500
rosa_samantha Rh1AG461500 Rh1BG418100 Rh1CG432000 Rh1DG450300
rosa_wichuraiana Rw1G041030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 2 cut(s) 44, 53
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 136
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 1 cut(s) 134
AoxI GGCC 2 cut(s) 3, 46
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 175
AsuII TTCGAA 2 cut(s) 121, 219
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 190
BccI CCATC 1 cut(s) 197
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 1 cut(s) 168
Bpu14I TTCGAA 2 cut(s) 121, 219
BsaJI CCNNGG 2 cut(s) 153, 225
BseDI CCNNGG 2 cut(s) 153, 225
BseYI CCCAGC 2 cut(s) 56, 62
BshFI GGCC 2 cut(s) 5, 48
BshNI GGYRCC 1 cut(s) 190
BsnI GGCC 2 cut(s) 5, 48
Bsp119I TTCGAA 2 cut(s) 121, 219
BspACI CCGC 2 cut(s) 44, 53
BspANI GGCC 2 cut(s) 5, 48
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 192
BspT104I TTCGAA 2 cut(s) 121, 219
BspT107I GGYRCC 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 153, 225
BssT1I CCWWGG 2 cut(s) 153, 225
BstBI TTCGAA 2 cut(s) 121, 219
BstC8I GCNNGC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BsuRI GGCC 2 cut(s) 5, 48
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 46
CciI TCATGA 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 7, 142
CviJI RGCY 5 cut(s) 5, 48, 56, 62, 152
CviKI_1 RGCY 5 cut(s) 5, 48, 56, 62, 152
CviQI GTAC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 153, 225
EcoT14I CCWWGG 2 cut(s) 153, 225
ErhI CCWWGG 2 cut(s) 153, 225
FaeI CATG 2 cut(s) 10, 145
FaiI YATR 2 cut(s) 8, 143
FatI CATG 2 cut(s) 6, 141
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
GsaI CCCAGC 2 cut(s) 60, 66
HaeIII GGCC 2 cut(s) 5, 48
Hin1II CATG 2 cut(s) 10, 145
HinfI GANTC 2 cut(s) 118, 212
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
Hsp92II CATG 2 cut(s) 10, 145
LpnPI CCDG 2 cut(s) 42, 48
LweI GCATC 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 136, 197
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 3 cut(s) 104, 154, 204
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 238
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NlaIII CATG 2 cut(s) 10, 145
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 24
NspV TTCGAA 2 cut(s) 121, 219
PagI TCATGA 1 cut(s) 141
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PspFI CCCAGC 2 cut(s) 56, 62
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 46
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 206
SetI ASST 5 cut(s) 115, 159, 165, 196, 227
SfaNI GCATC 1 cut(s) 168
SfuI TTCGAA 2 cut(s) 121, 219
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 2 cut(s) 136, 197
SsiI CCGC 2 cut(s) 44, 53
StyI CCWWGG 2 cut(s) 153, 225
TaqI TCGA 2 cut(s) 121, 219
TasI AATT 2 cut(s) 136, 197
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 130
TspRI CASTG 1 cut(s) 33
XapI RAATTY 1 cut(s) 136
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.