RchiOBHm_Chr0c20g0500181

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0019819
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 597 bp
ATGGCTTCTATCCATGTCCTTGGTTTGGTTTGCTTTTCTCTCTTTTTATCAACTCATTCAGTGCTTGCGGCGATAGATTATGGACAAGCTCTTACAAAGTCTTTGTTGTATTATGAGGCTCAACGATCTGGTAAGTTGCCTCCTGAACAGAGAGTGCAATGGCGTGGCGATTCAGCGCTTAAAGATGGAAATGATACTGGTGTTAATCTTGATGGAGGGTATTATGATTCTGGGGACAATGTCAAGTTTGGATTCCCCATGGCATTCACAATAACAATGCTTTCATGGACAATAGAGTTCGCAAGCAAACTTGAAACCAAGAATGAGCTCTCAAACGCATTGGACGCCATTAAATGGGGCACAGACTATTTGATCAAAGCACACGCTCAGCCAAATGTTCTCTATGGTGAAGTTGGCGATGGCGGTTCTGATCATGCTTGTTGGCAGAGACCGGAAGACATGACTACCCACGGACATCCTTCAAGATCGATGAGCAGCATCCAGGTTCTGATCTTGCTGGTGAAACCGCAGCTGCTTTTGCCGCAGCTTCCATTGCTTTCAAGGATAAAGACCCTACATATTCTGGCCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

198

Amino Acids

21.79

Weight (kDa)

6.13

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 27 - 164 2.7e-56 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019819)

Species Orthologous Gene IDs
pyrus_communis pycom06g10010 pycom17g12680
rosa_chinensis RchiOBHm_Chr0c20g0500181 RchiOBHm_Chr1g0340171
rosa_multiflora Rmu_sc0003311.1_g000003 Rmu_sc0032132.1_g000001
rosa_samantha Rh1CG166700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 354
AciI CCGC 4 cut(s) 68, 423, 527, 542
AcoI YGGCCR 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 345
AfeI AGCGCT 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 25, 354
AgsI TTSAA 3 cut(s) 314, 483, 561
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 5 cut(s) 89, 328, 532, 547, 591
AluI AGCT 5 cut(s) 89, 328, 532, 547, 591
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 442
AlwNI CAGNNNCTG 1 cut(s) 508
Aor51HI AGCGCT 1 cut(s) 177
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 4 cut(s) 495, 529, 532, 544
AspLEI GCGC 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 419, 532
BaeGI GKGCMC 1 cut(s) 362
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BalI TGGCCA 1 cut(s) 587
BanII GRGCYC 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 4 cut(s) 507, 519, 541, 556
BccI CCATC 3 cut(s) 179, 206, 413
BciT130I CCWGG 1 cut(s) 503
BclI TGATCA 2 cut(s) 372, 430
BcoDI GTCTC 1 cut(s) 442
BfoI RGCGCY 1 cut(s) 179
BisI GCNGC 6 cut(s) 69, 496, 530, 533, 542, 545
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 6 cut(s) 70, 497, 531, 534, 543, 546
Bme1390I CCNGG 1 cut(s) 503
BmrFI CCNGG 1 cut(s) 503
BmsI GCATC 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 387
Bsa29I ATCGAT 1 cut(s) 488
BsaHI GRCGYC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 19, 258, 469
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 354
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 2 cut(s) 164, 551
BseBI CCWGG 1 cut(s) 503
BseCI ATCGAT 1 cut(s) 488
BseDI CCNNGG 3 cut(s) 19, 258, 469
BseGI GGATG 2 cut(s) 475, 498
BseLI CCNNNNNNNGG 2 cut(s) 25, 354
BseMI GCAATG 2 cut(s) 164, 551
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 4 cut(s) 507, 519, 541, 556
BshFI GGCC 1 cut(s) 587
BshVI ATCGAT 1 cut(s) 488
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 25, 354
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 1 cut(s) 587
Bso31I GGTCTC 1 cut(s) 442
Bsp1286I GDGCHC 2 cut(s) 330, 362
Bsp143I GATC 5 cut(s) 125, 372, 430, 485, 510
Bsp1720I GCTNAGC 1 cut(s) 387
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 4 cut(s) 68, 423, 527, 542
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 1 cut(s) 400
BspDI ATCGAT 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 442
BsrDI GCAATG 2 cut(s) 164, 551
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 3 cut(s) 19, 258, 469
BssMI GATC 5 cut(s) 125, 372, 430, 485, 510
BssNI GRCGYC 1 cut(s) 345
BssT1I CCWWGG 2 cut(s) 19, 258
Bst2UI CCWGG 1 cut(s) 503
BstACI GRCGYC 1 cut(s) 345
BstC8I GCNNGC 3 cut(s) 66, 304, 589
BstDEI CTNAG 1 cut(s) 387
BstDSI CCRYGG 2 cut(s) 258, 469
BstF5I GGATG 2 cut(s) 475, 498
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 5 cut(s) 128, 375, 433, 488, 513
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 5 cut(s) 125, 372, 430, 485, 510
BstMWI GCNNNNNNNGC 4 cut(s) 344, 538, 541, 553
BstNI CCWGG 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 501
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 4 cut(s) 507, 519, 541, 556
BstV2I GAAGAC 1 cut(s) 462
BstXI CCANNNNNNTGG 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 488
BsuRI GGCC 1 cut(s) 587
BsuTUI ATCGAT 1 cut(s) 488
BtgI CCRYGG 2 cut(s) 258, 469
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 475, 498
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 3 cut(s) 66, 304, 589
CaiI CAGNNNCTG 1 cut(s) 508
CfoI GCGC 1 cut(s) 178
ClaI ATCGAT 1 cut(s) 488
CseI GACGC 1 cut(s) 353
CviAII CATG 5 cut(s) 14, 259, 285, 434, 460
CviJI RGCY 9 cut(s) 5, 89, 119, 328, 391, 532, 547, 587, 591
CviKI_1 RGCY 9 cut(s) 5, 89, 119, 328, 391, 532, 547, 587, 591
DdeI CTNAG 1 cut(s) 387
DpnI GATC 5 cut(s) 127, 374, 432, 487, 512
DpnII GATC 5 cut(s) 125, 372, 430, 485, 510
EaeI YGGCCR 1 cut(s) 585
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 19, 258
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 442
Eco47III AGCGCT 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 2 cut(s) 19, 258
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 2 cut(s) 19, 258
FaeI CATG 5 cut(s) 17, 262, 288, 437, 463
FaqI GGGAC 1 cut(s) 248
FatI CATG 5 cut(s) 13, 258, 284, 433, 459
FbaI TGATCA 2 cut(s) 372, 430
Fnu4HI GCNGC 6 cut(s) 69, 496, 530, 533, 542, 545
FokI GGATG 2 cut(s) 462, 485
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 6 cut(s) 69, 496, 530, 533, 542, 545
GlaI GCGC 1 cut(s) 177
GluI GCNGC 6 cut(s) 69, 496, 530, 533, 542, 545
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 587
HapII CCGG 1 cut(s) 452
HgaI GACGC 1 cut(s) 353
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 5 cut(s) 17, 262, 288, 437, 463
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 3 cut(s) 170, 227, 252
HpaII CCGG 1 cut(s) 452
HphI GGTGA 2 cut(s) 419, 532
Hpy188I TCNGA 2 cut(s) 430, 510
Hpy188III TCNNGA 4 cut(s) 143, 209, 483, 594
HpyAV CCTTC 1 cut(s) 489
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 538, 541, 553
HpyF3I CTNAG 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 5 cut(s) 17, 262, 288, 437, 463
HspAI GCGC 1 cut(s) 176
Ksp22I TGATCA 2 cut(s) 372, 430
Kzo9I GATC 5 cut(s) 125, 372, 430, 485, 510
LpnPI CCDG 9 cut(s) 114, 156, 183, 216, 465, 488, 503, 515, 569
Lsp1109I GCAGC 4 cut(s) 507, 519, 541, 556
LweI GCATC 1 cut(s) 507
MalI GATC 5 cut(s) 127, 374, 432, 487, 512
MboI GATC 5 cut(s) 125, 372, 430, 485, 510
MboII GAAGA 1 cut(s) 467
MhlI GDGCHC 2 cut(s) 330, 362
MlsI TGGCCA 1 cut(s) 587
MluNI TGGCCA 1 cut(s) 587
MnlI CCTC 3 cut(s) 109, 150, 209
Mox20I TGGCCA 1 cut(s) 587
MscI TGGCCA 1 cut(s) 587
MseI TTAA 3 cut(s) 180, 204, 351
Msp20I TGGCCA 1 cut(s) 587
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 503
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 4 cut(s) 344, 538, 541, 553
NcoI CCATGG 1 cut(s) 258
NdeII GATC 5 cut(s) 125, 372, 430, 485, 510
NlaIII CATG 5 cut(s) 17, 262, 288, 437, 463
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 3 cut(s) 170, 227, 252
PflFI GACNNNGTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 6 cut(s) 70, 497, 531, 534, 543, 546
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 508
PsyI GACNNNGTC 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 532
SacI GAGCTC 1 cut(s) 330
SaqAI TTAA 3 cut(s) 180, 204, 351
SatI GCNGC 6 cut(s) 69, 496, 530, 533, 542, 545
Sau3AI GATC 5 cut(s) 125, 372, 430, 485, 510
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 2 cut(s) 330, 362
SetI ASST 6 cut(s) 91, 330, 507, 534, 549, 593
SfaNI GCATC 1 cut(s) 507
SsiI CCGC 4 cut(s) 68, 423, 527, 542
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 2 cut(s) 19, 258
TaqI TCGA 1 cut(s) 488
TauI GCSGC 2 cut(s) 71, 544
TfiI GAWTC 3 cut(s) 170, 227, 252
Tru1I TTAA 3 cut(s) 180, 204, 351
Tru9I TTAA 3 cut(s) 180, 204, 351
TscAI CASTG 1 cut(s) 66
TseI GCWGC 4 cut(s) 495, 529, 532, 544
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 1 cut(s) 66
Tth111I GACNNNGTC 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.