RCHIOBHM_CPG0502791

NAD(P)H-quinone oxidoreductase chain 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Pt
OG0020222
Physical Location & Seq
Forward (+)
150509 .. 151147
639 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15740

Sequence Viewer

Length: 537 bp
ATGAATAATTTTCCTTGGTTAACGCTAGTTGTAGTTTTGCCAATAACCGCGGGTTCCTTAATTTTCTTTCTTCCTCATAGAGGAAATAAGGTAATAAGATGGTATACTATATCTATATGCATAACGGAACTCCTTCTAACAACCTATGCATTCGGTTATCATTTCCAATTGGATGATCCGTTAATGCAACTAACGGAGAATTATCAATGGATCAATTTTTTTGATTTTTACTGGAGATTGGGAATAGATGGAATTTCTATAGGACCCATTTTACTGACAGGATTTATCACAACTTTAGCTACTTTAGCGGCTTGGCCCGTTACTCGAGATTCCCGACTATTCCATTTCCTAATGTTAGCAATGTATAGCGGTCAAATAGGACCATTTTCTTCTCAAGACCTTTTACTTTTTTTCATCATGTGGGAGTTAGAATTAATTCCCGTTTATCTACTTCTATCCATGTGGGGGGAAAGAAACGTTTGTATTCAGCTACAAAATTTATTTTGTACACTGCCGGAGGTTCCGTTTTTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 map00190 map01100
Pfam Domains
Protein Families
Fer4 Proton_antipo_M

Protein Analysis

178

Amino Acids

20.84

Weight (kDa)

4.93

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020222)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01050
malus_domestica MD04G1189100.v1.1
rosa_chinensis RchiOBHm_Chr5g0017231 RchiOBHm_Chr5g0043051 RchiOBHm_CPg0502791
rosa_samantha Rh5BG295100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 104
AccII CGCG 1 cut(s) 50
AciI CCGC 4 cut(s) 48, 50, 308, 369
AclI AACGTT 1 cut(s) 477
AclWI GGATC 2 cut(s) 170, 218
AcsI RAATTY 2 cut(s) 252, 496
AfaI GTAC 1 cut(s) 508
AfiI CCNNNNNNNGG 2 cut(s) 80, 465
AluBI AGCT 2 cut(s) 299, 490
AluI AGCT 2 cut(s) 299, 490
AlwI GGATC 2 cut(s) 170, 218
Ama87I CYCGRG 1 cut(s) 324
AoxI GGCC 1 cut(s) 314
ApoI RAATTY 2 cut(s) 252, 496
AseI ATTAAT 1 cut(s) 434
Asp700I GAANNNNTTC 2 cut(s) 132, 435
AspS9I GGNCC 3 cut(s) 263, 315, 380
AvaI CYCGRG 1 cut(s) 324
AvaII GGWCC 2 cut(s) 263, 380
BccI CCATC 2 cut(s) 93, 242
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme18I GGWCC 2 cut(s) 263, 380
BmeT110I CYCGRG 1 cut(s) 324
BmgT120I GGNCC 3 cut(s) 263, 315, 380
BmiI GGNNCC 3 cut(s) 55, 265, 522
BpmI CTGGAG 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 14, 48
BsaXI ACNNNNNCTCC 1 cut(s) 509
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 465
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 14, 48
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 80, 465
BseMI GCAATG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 80, 465
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 324
Bsp1407I TGTACA 1 cut(s) 506
Bsp143I GATC 2 cut(s) 175, 210
BspACI CCGC 4 cut(s) 48, 50, 308, 369
BspANI GGCC 1 cut(s) 316
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 3 cut(s) 55, 265, 522
BspPI GGATC 2 cut(s) 170, 218
BsrDI GCAATG 1 cut(s) 366
BsrGI TGTACA 1 cut(s) 506
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 14, 48
BssMI GATC 2 cut(s) 175, 210
BssNAI GTATAC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 14
Bst1107I GTATAC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 506
BstDSI CCRYGG 1 cut(s) 48
BstENI CCTNNNNNAGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 2 cut(s) 178, 213
BstMBI GATC 2 cut(s) 175, 210
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 1 cut(s) 50
BstZ17I GTATAC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 316
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 1 cut(s) 509
Cfr13I GGNCC 3 cut(s) 263, 315, 380
Cfr42I CCGCGG 1 cut(s) 51
Csp6I GTAC 1 cut(s) 507
CviAII CATG 2 cut(s) 418, 460
CviJI RGCY 4 cut(s) 299, 311, 316, 490
CviKI_1 RGCY 4 cut(s) 299, 311, 316, 490
CviQI GTAC 1 cut(s) 507
DpnI GATC 2 cut(s) 177, 212
DpnII GATC 2 cut(s) 175, 210
Eco130I CCWWGG 1 cut(s) 14
Eco47I GGWCC 2 cut(s) 263, 380
Eco88I CYCGRG 1 cut(s) 324
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 14
EcoT22I ATGCAT 2 cut(s) 122, 151
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 2 cut(s) 421, 463
FatI CATG 2 cut(s) 417, 459
FauI CCCGC 1 cut(s) 43
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 253
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 515
Hin1II CATG 2 cut(s) 421, 463
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 329
HpaI GTTAAC 1 cut(s) 21
HpaII CCGG 1 cut(s) 515
Hpy166II GTNNAC 3 cut(s) 21, 105, 509
Hpy188III TCNNGA 3 cut(s) 326, 333, 395
Hpy8I GTNNAC 3 cut(s) 21, 105, 509
HpyAV CCTTC 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 3 cut(s) 120, 149, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 2 cut(s) 421, 463
KspAI GTTAAC 1 cut(s) 21
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 2 cut(s) 175, 210
LpnPI CCDG 3 cut(s) 217, 264, 528
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 177, 212
MboI GATC 2 cut(s) 175, 210
MboII GAAGA 2 cut(s) 62, 381
MfeI CAATTG 1 cut(s) 167
MluCI AATT 9 cut(s) 7, 60, 167, 199, 214, 252, 431, 435, 496
MnlI CCTC 3 cut(s) 74, 84, 511
Mph1103I ATGCAT 2 cut(s) 122, 151
MroXI GAANNNNTTC 2 cut(s) 132, 435
MseI TTAA 5 cut(s) 20, 59, 182, 434, 535
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 515
MunI CAATTG 1 cut(s) 167
Mva1269I GAATGC 1 cut(s) 149
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 2 cut(s) 175, 210
NlaIII CATG 2 cut(s) 421, 463
NlaIV GGNNCC 3 cut(s) 55, 265, 522
NsiI ATGCAT 2 cut(s) 122, 151
PaeR7I CTCGAG 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 2 cut(s) 132, 435
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 434
Psp1406I AACGTT 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 263
PspN4I GGNNCC 3 cut(s) 55, 265, 522
PspPI GGNCC 3 cut(s) 263, 315, 380
PspPPI RGGWCCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 5 cut(s) 20, 59, 182, 434, 535
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 2 cut(s) 175, 210
Sau96I GGNCC 3 cut(s) 263, 315, 380
SetI ASST 7 cut(s) 93, 146, 301, 402, 480, 492, 522
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 324
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 2 cut(s) 263, 380
SlaI CTCGAG 1 cut(s) 324
SmlI CTYRAG 2 cut(s) 324, 393
SmoI CTYRAG 2 cut(s) 324, 393
Sse9I AATT 9 cut(s) 7, 60, 167, 199, 214, 252, 431, 435, 496
SsiI CCGC 4 cut(s) 48, 50, 308, 369
SspMI CTAG 1 cut(s) 26
StyI CCWWGG 1 cut(s) 14
TaiI ACGT 1 cut(s) 480
TaqI TCGA 1 cut(s) 325
TasI AATT 9 cut(s) 7, 60, 167, 199, 214, 252, 431, 435, 496
TatI WGTACW 1 cut(s) 506
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 5 cut(s) 20, 59, 182, 434, 535
Tru9I TTAA 5 cut(s) 20, 59, 182, 434, 535
TscAI CASTG 1 cut(s) 516
TspDTI ATGAA 2 cut(s) 17, 403
TspGWI ACGGA 4 cut(s) 140, 168, 209, 513
TspRI CASTG 1 cut(s) 516
VpaK11BI GGWCC 2 cut(s) 263, 380
VspI ATTAAT 1 cut(s) 434
XagI CCTNNNNNAGG 1 cut(s) 78
XapI RAATTY 2 cut(s) 252, 496
XhoI CTCGAG 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 104
XmnI GAANNNNTTC 2 cut(s) 132, 435
XspI CTAG 1 cut(s) 26
Zsp2I ATGCAT 2 cut(s) 122, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.