RchiOBHm_Chr1g0314851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019849
Physical Location & Seq
Reverse (-)
2136066 .. 2136943
878 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54540

Sequence Viewer

Length: 549 bp
ATGTCAAGGTCGAAAAGTCAAGGCGTCGACCAGTCAAGTAACTGTTCACTGCCACTGGACATGGGTTTCCACCCGTTTTTTTTCTTGACCTGTCAAGACTGTTCATTTTCATTGTTCATTGATTTTTTAACGATTTTTCCTCTTTTCTTCACTTTCACCCCTGAAACTCTCTCTTGTCTCTCCTCCGCATCTCCTCAGACCCGCCGGGTCCCGACAGACCAGACCCAAGTTTTCCGGCGCCATCGTGCGTCCTCCAACAGCGGACCCGAGTCGTACGGGCTCGCCTCGGCCTGCTCCTCCTCCCCACGGTGCTGCCTCACCTCACCACTCAACCCAGAAGGAGATCGAAGCCCTCCCACAGCCGTGCGACATTCCAGTTTTTCGGCATCCTCTCGACGACTGGGGCAGACGCGGTCTACTTGCTGGTGCTTCTTCATTCGTGCGTCGCCTCCACGCGTCCTCTCCTCCGCGTCTCTCTCTGCTTGTCTATCGCTGACGTCTCCTTCGACTGGTCATAATTTTAGTCAAGGCTTTGCCCTTTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.87

Weight (kDa)

8.97

Isoelectric Point (pI)

81.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019849)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314851
rosa_multiflora Rmu_sc0001673.1_g000008 Rmu_sc0008442.1_g000013
rosa_roxburghii Rroxscaffold_1G00061690 Rroxscaffold_6G00409780
rosa_samantha Rh2BG118300 Rh2DG119600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 500
AccB1I GGYRCC 1 cut(s) 237
AccI GTMKAC 2 cut(s) 27, 416
AccII CGCG 3 cut(s) 412, 456, 470
AciI CCGC 5 cut(s) 186, 202, 261, 412, 468
AcyI GRCGYC 3 cut(s) 24, 238, 497
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 306, 509
AflIII ACRYGT 1 cut(s) 454
AleI CACNNNNGTG 1 cut(s) 362
Alw26I GTCTC 3 cut(s) 182, 477, 504
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 312
ArsI GACNNNNNNTTYG 2 cut(s) 487, 519
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 208, 263
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 148, 310, 315
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 2 cut(s) 208, 263
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 249
BceAI ACGGC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 3 cut(s) 182, 477, 504
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 2 cut(s) 208, 263
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 208, 263
BmiI GGNNCC 4 cut(s) 209, 210, 239, 265
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 2 cut(s) 197, 395
BmuI ACTGGG 1 cut(s) 410
BoxI GACNNNNGTC 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 206
BsaHI GRCGYC 3 cut(s) 24, 238, 497
BsaJI CCNNGG 2 cut(s) 285, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 306, 509
Bse1I ACTGG 5 cut(s) 31, 60, 375, 405, 514
BseDI CCNNGG 2 cut(s) 285, 305
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 2 cut(s) 306, 509
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 5 cut(s) 31, 60, 375, 405, 514
BseRI GAGGAG 5 cut(s) 172, 183, 286, 289, 454
BseXI GCAGC 1 cut(s) 299
Bsh1236I CGCG 3 cut(s) 412, 456, 470
BshFI GGCC 1 cut(s) 290
BshNI GGYRCC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 205, 235
BsiWI CGTACG 1 cut(s) 273
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 306, 509
BsmAI GTCTC 3 cut(s) 182, 477, 504
BsmBI CGTCTC 2 cut(s) 477, 504
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 5 cut(s) 186, 202, 261, 412, 468
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 3 cut(s) 412, 456, 470
BspLI GGNNCC 4 cut(s) 209, 210, 239, 265
BspT107I GGYRCC 1 cut(s) 237
BsrI ACTGG 5 cut(s) 31, 60, 375, 405, 514
BssECI CCNNGG 2 cut(s) 285, 305
BssMI GATC 1 cut(s) 343
BssNI GRCGYC 3 cut(s) 24, 238, 497
Bst4CI ACNGT 3 cut(s) 44, 101, 309
BstACI GRCGYC 3 cut(s) 24, 238, 497
BstC8I GCNNGC 2 cut(s) 282, 292
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 386
BstFNI CGCG 3 cut(s) 412, 456, 470
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 3 cut(s) 182, 477, 504
BstMBI GATC 1 cut(s) 343
BstPAI GACNNNNGTC 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 3 cut(s) 412, 456, 470
BstV1I GCAGC 1 cut(s) 299
BsuRI GGCC 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 386
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 47, 53
Cac8I GCNNGC 2 cut(s) 282, 292
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 208, 263
CseI GACGC 6 cut(s) 13, 237, 418, 432, 445, 459
Csp6I GTAC 1 cut(s) 274
CviAII CATG 1 cut(s) 61
CviJI RGCY 5 cut(s) 280, 290, 351, 362, 531
CviKI_1 RGCY 5 cut(s) 280, 290, 351, 362, 531
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 195
DinI GGCGCC 1 cut(s) 239
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 2 cut(s) 208, 263
Eco88I CYCGRG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 282
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
Esp3I CGTCTC 2 cut(s) 477, 504
FaeI CATG 1 cut(s) 64
FaiI YATR 2 cut(s) 62, 516
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 209
FblI GTMKAC 2 cut(s) 27, 416
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 1 cut(s) 373
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 313
GlaI GCGC 1 cut(s) 239
GluI GCNGC 1 cut(s) 313
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 1 cut(s) 290
HapII CCGG 2 cut(s) 205, 235
HgaI GACGC 6 cut(s) 13, 237, 418, 432, 445, 459
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 3 cut(s) 24, 238, 497
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 1 cut(s) 269
HpaII CCGG 2 cut(s) 205, 235
HphI GGTGA 3 cut(s) 148, 310, 315
Hpy166II GTNNAC 3 cut(s) 28, 47, 417
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 4 cut(s) 85, 95, 211, 393
Hpy8I GTNNAC 3 cut(s) 28, 47, 417
Hpy99I CGWCG 3 cut(s) 29, 399, 448
HpyAV CCTTC 2 cut(s) 332, 513
HpyCH4III ACNGT 3 cut(s) 44, 101, 309
HpyCH4IV ACGT 1 cut(s) 497
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 497
Hsp92I GRCGYC 3 cut(s) 24, 238, 497
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 238
KasI GGCGCC 1 cut(s) 237
KflI GGGWCCC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 2 cut(s) 197, 395
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 2 cut(s) 139, 424
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 1 cut(s) 517
MluI ACGCGT 1 cut(s) 454
Mly113I GGCGCC 1 cut(s) 238
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 279
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 2 cut(s) 205, 235
MspR9I CCNGG 1 cut(s) 206
MvnI CGCG 3 cut(s) 412, 456, 470
NarI GGCGCC 1 cut(s) 238
NciI CCSGG 1 cut(s) 206
NdeII GATC 1 cut(s) 343
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 4 cut(s) 209, 210, 239, 265
NmeAIII GCCGAG 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 503
Pfl23II CGTACG 1 cut(s) 273
PflFI GACNNNGTC 1 cut(s) 412
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 1 cut(s) 277
PluTI GGCGCC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 208
PspLI CGTACG 1 cut(s) 273
PspN4I GGNNCC 4 cut(s) 209, 210, 239, 265
PspPI GGNCC 2 cut(s) 208, 263
PspPPI RGGWCCY 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 412
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 362
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 2 cut(s) 208, 263
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 282
SetI ASST 4 cut(s) 11, 92, 323, 500
SfaNI GCATC 2 cut(s) 197, 395
SfoI GGCGCC 1 cut(s) 239
SinI GGWCC 2 cut(s) 208, 263
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 1 cut(s) 517
SsiI CCGC 5 cut(s) 186, 202, 261, 412, 468
SspDI GGCGCC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 44, 101, 309
TaiI ACGT 1 cut(s) 500
TaqI TCGA 5 cut(s) 11, 27, 346, 394, 506
TasI AATT 1 cut(s) 517
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 2 cut(s) 54, 60
TseI GCWGC 1 cut(s) 312
TspDTI ATGAA 4 cut(s) 93, 99, 106, 424
TspRI CASTG 2 cut(s) 54, 60
Tth111I GACNNNGTC 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 208, 263
XmiI GTMKAC 2 cut(s) 27, 416
ZraI GACGTC 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.