Rroxscaffold_6G00409780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019849
Physical Location & Seq
Forward (+)
32267368 .. 32282219
14852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409780.1

Sequence Viewer

Length: 474 bp
ATGCGTCCTCTCTTCCGCCCAATTCTTGTTGCTAGGCGACAAACGAGTCAACCCACGCGGTCAGCAAATGCGGCTAAACCTCATTCGTGCGTCGCCTCCACGCGTCCTCTCTTCGAGTCTCTCTGCTTGTCTATCGTTGACATCGGCCACGTCCGGCTTTGGGCCTATCGGCGTCTCCTTCGACTGGTCATAATTTTAGTCAGCGCTTTACCCTTTTGCTTCGACTCGGTCAAGAAATGCCAGATATTGGCTGGTCAAGGAAGGCCCGTTGGAAGCAAGTTTTGGTGTTTGGCTGGTCACCACCTCACCAAATCTAGCCGTAAAAGTCAAATACATGTCTATACTAACCAAGTCAATACTACAGGGAAGGAGACTCTATTACCTAATCCAAGGAGCAAAAGAATCAGCAAGCTAGCCAGTTGTGTGAACAAGCAGGAGGATAGTGAGTTCAAGTGTTCAAACATATTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.66

Weight (kDa)

10.49

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019849)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314851
rosa_multiflora Rmu_sc0001673.1_g000008 Rmu_sc0008442.1_g000013
rosa_roxburghii Rroxscaffold_1G00061690 Rroxscaffold_6G00409780
rosa_samantha Rh2BG118300 Rh2DG119600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 45
AccB7I CCANNNNNTGG 1 cut(s) 247
AccII CGCG 2 cut(s) 58, 103
AciI CCGC 3 cut(s) 16, 58, 71
AcoI YGGCCR 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 172
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 3 cut(s) 160, 184, 247
AflIII ACRYGT 2 cut(s) 101, 334
AgsI TTSAA 2 cut(s) 451, 459
AjiI CACGTC 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 265, 297
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 1 cut(s) 412
AluI AGCT 1 cut(s) 412
Alw26I GTCTC 3 cut(s) 123, 179, 365
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 3 cut(s) 145, 162, 263
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 162, 264
AsuHPI GGTGA 2 cut(s) 290, 298
AsuNHI GCTAGC 1 cut(s) 412
BceAI ACGGC 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 123, 179, 365
BfaI CTAG 3 cut(s) 33, 315, 413
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 207
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 162, 264
BmtI GCTAGC 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 389
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 184, 247
Bse1I ACTGG 2 cut(s) 189, 417
BseDI CCNNGG 1 cut(s) 389
BseLI CCNNNNNNNGG 3 cut(s) 160, 184, 247
BseNI ACTGG 2 cut(s) 189, 417
Bsh1236I CGCG 2 cut(s) 58, 103
BshFI GGCC 3 cut(s) 147, 164, 265
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 160, 184, 247
BsmAI GTCTC 3 cut(s) 123, 179, 365
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 3 cut(s) 147, 164, 265
BspACI CCGC 3 cut(s) 16, 58, 71
BspANI GGCC 3 cut(s) 147, 164, 265
BspFNI CGCG 2 cut(s) 58, 103
BspOI GCTAGC 1 cut(s) 416
BsrI ACTGG 2 cut(s) 189, 417
BssECI CCNNGG 1 cut(s) 389
BssNI GRCGYC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 389
Bst6I CTCTTC 2 cut(s) 17, 116
BstACI GRCGYC 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 410, 414
BstEII GGTNACC 1 cut(s) 296
BstFNI CGCG 2 cut(s) 58, 103
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 1 cut(s) 206
BstMAI GTCTC 3 cut(s) 123, 179, 365
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 338
BstPI GGTNACC 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 2 cut(s) 58, 103
BsuRI GGCC 3 cut(s) 147, 164, 265
BtrI CACGTC 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 410, 414
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 162, 264
CseI GACGC 3 cut(s) 79, 92, 161
CviAII CATG 1 cut(s) 335
DrdI GACNNNNNNGTC 1 cut(s) 45
DseDI GACNNNNNNGTC 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 17, 116
EarI CTCTTC 2 cut(s) 17, 116
EciI GGCGGA 1 cut(s) 5
Eco130I CCWWGG 1 cut(s) 389
Eco47III AGCGCT 1 cut(s) 205
Eco91I GGTNACC 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 389
ErhI CCWWGG 1 cut(s) 389
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 1 cut(s) 338
FaiI YATR 4 cut(s) 191, 336, 342, 464
FatI CATG 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 3 cut(s) 33, 315, 413
GlaI GCGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 3 cut(s) 147, 164, 265
HapII CCGG 1 cut(s) 154
HgaI GACGC 3 cut(s) 79, 92, 161
HhaI GCGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HincII GTYRAC 2 cut(s) 50, 139
HindII GTYRAC 2 cut(s) 50, 139
HinfI GANTC 5 cut(s) 46, 116, 224, 373, 402
HpaII CCGG 1 cut(s) 154
HphI GGTGA 2 cut(s) 290, 298
Hpy166II GTNNAC 3 cut(s) 50, 139, 427
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 3 cut(s) 50, 139, 427
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 188, 255, 361
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 393
LpnPI CCDG 8 cut(s) 167, 170, 237, 254, 279, 348, 419, 430
MaeI CTAG 3 cut(s) 33, 315, 413
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 296
MboII GAAGA 2 cut(s) 4, 103
MluCI AATT 2 cut(s) 21, 192
MluI ACGCGT 1 cut(s) 101
MlyI GAGTC 4 cut(s) 55, 125, 218, 367
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 6 cut(s) 18, 90, 106, 117, 314, 430
MseI TTAA 1 cut(s) 472
MspI CCGG 1 cut(s) 154
MvnI CGCG 2 cut(s) 58, 103
MwoI GCNNNNNNNGC 1 cut(s) 71
NheI GCTAGC 1 cut(s) 412
NlaIII CATG 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 338
PciI ACATGT 1 cut(s) 334
PfeI GAWTC 1 cut(s) 402
PflFI GACNNNGTC 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 247
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 4 cut(s) 54, 124, 218, 367
PpsI GAGTC 4 cut(s) 54, 124, 218, 367
PscI ACATGT 1 cut(s) 334
PspEI GGTNACC 1 cut(s) 296
PspPI GGNCC 2 cut(s) 162, 264
PsyI GACNNNGTC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 472
SatI GCNGC 1 cut(s) 72
Sau96I GGNCC 2 cut(s) 162, 264
SchI GAGTC 4 cut(s) 55, 125, 218, 367
SetI ASST 5 cut(s) 82, 153, 306, 385, 414
SfcI CTRYAG 1 cut(s) 360
Sse9I AATT 2 cut(s) 21, 192
SsiI CCGC 3 cut(s) 16, 58, 71
SspMI CTAG 3 cut(s) 33, 315, 413
StyI CCWWGG 1 cut(s) 389
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 114, 181, 222
TaqII GACCGA 1 cut(s) 217
TasI AATT 2 cut(s) 21, 192
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
Tth111I GACNNNGTC 1 cut(s) 227
Van91I CCANNNNNTGG 1 cut(s) 247
XceI RCATGY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XspI CTAG 3 cut(s) 33, 315, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.