Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019849

Physical Location & Seq

Genomic Coordinates Forward (+)

9953065 .. 9955146

Gene Structure 2082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG119600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAACTGGTTGCGTCTCCGGTAGGTAAAAATTTGGAAATTACCACGACGACCATGTATTTGGTGGAATCACCGGGGGAGCTACTTTTAGTTCACAAATATATGATTATGACTTTTATACAGCAGCACGGTCCTCTTTTACGTTCATTCGGTGTTTACAAGTTGAACGCACCCAAAAAGCAATGGGTTCTCATGAGGAGCTTGAATGATGGAATATTATCTTTGGGTGATTCTGATGATGGTTGCTTTGCTGCTCCTGCTCAAGATTTTCCTGGTTGTCATGGGAATCGCATTTATTTCTCCCACAAATTTTTATTAAGCGGTGTTAAATTTAAAGGAGTATGCAGGTACATTCCAAAGACAATGTACTGGTCCATGGATGTTGATGAACCGGCAGTTAAATTAAGTTCTGCATTTGCAGGAGTTTCCGGCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

145

Amino Acids

16.06

Weight (kDa)

8.99

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	16 - 102	3.1e-16	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314851
rosa_multiflora	Rmu_sc0001673.1_g000008 Rmu_sc0008442.1_g000013
rosa_roxburghii	Rroxscaffold_1G00061690 Rroxscaffold_6G00409780
rosa_samantha	Rh2BG118300 Rh2DG119600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	336
AciI	CCGC	1 cut(s)	321
AcsI	RAATTY	3 cut(s)	31, 308, 329
AfaI	GTAC	2 cut(s)	350, 368
AgsI	TTSAA	2 cut(s)	166, 205
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	2 cut(s)	82, 201
AluI	AGCT	2 cut(s)	82, 201
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	2 cut(s)	124, 251
ApoI	RAATTY	3 cut(s)	31, 308, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AspS9I	GGNCC	3 cut(s)	131, 372, 431
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	63, 239
AvaII	GGWCC	2 cut(s)	131, 372
BbvI	GCAGC	2 cut(s)	136, 238
BccI	CCATC	2 cut(s)	203, 233
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	336
BisI	GCNGC	2 cut(s)	125, 252
BlsI	GCNGC	2 cut(s)	126, 253
Bme1390I	CCNGG	2 cut(s)	75, 273
Bme18I	GGWCC	2 cut(s)	131, 372
BmgT120I	GGNCC	3 cut(s)	131, 372, 431
BmrFI	CCNGG	2 cut(s)	75, 273
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	74, 375
BsaWI	WCCGGW	1 cut(s)	19
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	12, 374
Bse3DI	GCAATG	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	74, 375
BseGI	GGATG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	12, 374
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	136, 238
BshFI	GGCC	1 cut(s)	432
BsiSI	CCGG	4 cut(s)	20, 74, 392, 429
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	432
BspHI	TCATGA	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	12, 374
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	74, 375
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	73, 271
BstV1I	GCAGC	2 cut(s)	136, 238
BstXI	CCANNNNNNTGG	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	385
BveI	ACCTGC	1 cut(s)	336
CciI	TCATGA	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	131, 372, 431
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	2 cut(s)	349, 367
CviAII	CATG	4 cut(s)	55, 193, 281, 376
CviJI	RGCY	3 cut(s)	82, 201, 432
CviKI_1	RGCY	3 cut(s)	82, 201, 432
CviQI	GTAC	2 cut(s)	349, 367
DraI	TTTAAA	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	131, 372
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	4 cut(s)	58, 196, 284, 379
FatI	CATG	4 cut(s)	54, 192, 280, 375
Fnu4HI	GCNGC	2 cut(s)	125, 252
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	125, 252
GluI	GCNGC	2 cut(s)	125, 252
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	4 cut(s)	20, 74, 392, 429
HgaI	GACGC	1 cut(s)	3
Hin1II	CATG	4 cut(s)	58, 196, 284, 379
HinfI	GANTC	3 cut(s)	68, 230, 286
HpaII	CCGG	4 cut(s)	20, 74, 392, 429
HphI	GGTGA	2 cut(s)	63, 239
Hpy166II	GTNNAC	2 cut(s)	94, 157
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	2 cut(s)	193, 263
Hpy8I	GTNNAC	2 cut(s)	94, 157
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	345, 413, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	4 cut(s)	58, 196, 284, 379
LmnI	GCTCC	3 cut(s)	79, 198, 259
LpnPI	CCDG	9 cut(s)	33, 87, 258, 270, 285, 331, 355, 405, 405
Lsp1109I	GCAGC	2 cut(s)	136, 238
MaeII	ACGT	1 cut(s)	142
MluCI	AATT	5 cut(s)	31, 39, 308, 329, 401
MnlI	CCTC	2 cut(s)	144, 189
MseI	TTAA	5 cut(s)	317, 327, 333, 399, 404
MspI	CCGG	4 cut(s)	20, 74, 392, 429
MspR9I	CCNGG	2 cut(s)	75, 273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	375
NlaIII	CATG	4 cut(s)	58, 196, 284, 379
PagI	TCATGA	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	68, 230, 286
PkrI	GCNGC	2 cut(s)	126, 253
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspPI	GGNCC	3 cut(s)	131, 372, 431
RsaI	GTAC	2 cut(s)	350, 368
RsaNI	GTAC	2 cut(s)	349, 367
SaqAI	TTAA	5 cut(s)	317, 327, 333, 399, 404
SatI	GCNGC	2 cut(s)	125, 252
Sau96I	GGNCC	3 cut(s)	131, 372, 431
ScrFI	CCNGG	2 cut(s)	75, 273
SetI	ASST	5 cut(s)	28, 84, 145, 203, 350
SinI	GGWCC	2 cut(s)	131, 372
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	5 cut(s)	31, 39, 308, 329, 401
SsiI	CCGC	1 cut(s)	321
SspI	AATATT	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	73, 271
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	145
TasI	AATT	5 cut(s)	31, 39, 308, 329, 401
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	3 cut(s)	68, 230, 286
Tru1I	TTAA	5 cut(s)	317, 327, 333, 399, 404
Tru9I	TTAA	5 cut(s)	317, 327, 333, 399, 404
TseI	GCWGC	2 cut(s)	124, 251
TspDTI	ATGAA	3 cut(s)	17, 135, 402
VpaK11BI	GGWCC	2 cut(s)	131, 372
XapI	RAATTY	3 cut(s)	31, 308, 329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.