Rmu_sc0008442.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008442.1
OG0019849
Physical Location & Seq
Forward (+)
46668 .. 48132
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008442.1_g000013.1.cds

Sequence Viewer

Length: 423 bp
atgaggagcttgaatgatggaatattatttttgggtgattctgatgatggttgctttgctgctcctgctcaagattttcctggttgtcatgggaatcgcatttatttctcccacaaatttttattaagcgggcgacaaacaagtcaacccacgctgtcagcaaatgcggctaaacctcatttgtgcgtcgcctccacgcgtcctctcctctgcgtctctctctgcttgtctatcgctaacatcggccacgtccggatttgggccgagctggcgtctcctcgactggtcataattttagtcaaggctttgccctttttcttcgactcggtcaagaaaggccagatattggctggtcaaggaaagcccggtggaagcaagttttggtgtttggctagtcaccacctcaccaaatctagctggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.15

Weight (kDa)

9.38

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019849)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314851
rosa_multiflora Rmu_sc0001673.1_g000008 Rmu_sc0008442.1_g000013
rosa_roxburghii Rroxscaffold_1G00061690 Rroxscaffold_6G00409780
rosa_samantha Rh2BG118300 Rh2DG119600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 141
AccB7I CCANNNNNTGG 1 cut(s) 346
AccII CGCG 1 cut(s) 199
AccIII TCCGGA 1 cut(s) 252
AciI CCGC 2 cut(s) 129, 167
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 259, 346
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 13
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AluBI AGCT 3 cut(s) 9, 268, 417
AluI AGCT 3 cut(s) 9, 268, 417
Alw26I GTCTC 2 cut(s) 220, 279
Aor13HI TCCGGA 1 cut(s) 252
AoxI GGCC 3 cut(s) 244, 261, 337
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 3 cut(s) 47, 389, 397
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 11, 41
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 2 cut(s) 220, 279
BfaI CTAG 2 cut(s) 393, 414
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 2 cut(s) 60, 168
BlsI GCNGC 2 cut(s) 61, 169
Bme1390I CCNGG 2 cut(s) 81, 366
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 261
BmrFI CCNGG 2 cut(s) 81, 366
BpuEI CTTGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 346
Bse1I ACTGG 1 cut(s) 288
BseAI TCCGGA 1 cut(s) 252
BseBI CCWGG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 259, 346
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 3 cut(s) 19, 197, 267
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 3 cut(s) 246, 263, 339
BsiSI CCGG 2 cut(s) 253, 366
BslI CCNNNNNNNGG 2 cut(s) 259, 346
BsmAI GTCTC 2 cut(s) 220, 279
BsmBI CGTCTC 2 cut(s) 220, 279
BsnI GGCC 3 cut(s) 246, 263, 339
Bsp13I TCCGGA 1 cut(s) 252
BspACI CCGC 2 cut(s) 129, 167
BspANI GGCC 3 cut(s) 246, 263, 339
BspEI TCCGGA 1 cut(s) 252
BspFNI CGCG 1 cut(s) 199
BsrI ACTGG 1 cut(s) 288
BssNI GRCGYC 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 81
BstACI GRCGYC 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 131, 270
BstFNI CGCG 1 cut(s) 199
BstMAI GTCTC 2 cut(s) 220, 279
BstMWI GCNNNNNNNGC 3 cut(s) 65, 167, 269
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 79, 364
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 46
BsuRI GGCC 3 cut(s) 246, 263, 339
BtrI CACGTC 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 131, 270
Cfr13I GGNCC 1 cut(s) 261
CseI GACGC 4 cut(s) 175, 188, 202, 261
CviAII CATG 1 cut(s) 89
DrdI GACNNNNNNGTC 1 cut(s) 141
DseDI GACNNNNNNGTC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 79
Esp3I CGTCTC 2 cut(s) 220, 279
FaeI CATG 1 cut(s) 92
FaiI YATR 2 cut(s) 90, 290
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 60, 168
Fsp4HI GCNGC 2 cut(s) 60, 168
FspBI CTAG 2 cut(s) 393, 414
GluI GCNGC 2 cut(s) 60, 168
HaeIII GGCC 3 cut(s) 246, 263, 339
HapII CCGG 2 cut(s) 253, 366
HgaI GACGC 4 cut(s) 175, 188, 202, 261
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 1 cut(s) 92
HincII GTYRAC 1 cut(s) 146
HindII GTYRAC 1 cut(s) 146
HinfI GANTC 3 cut(s) 38, 94, 323
HpaII CCGG 2 cut(s) 253, 366
HphI GGTGA 3 cut(s) 47, 389, 397
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 3 cut(s) 71, 253, 331
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 167, 269
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 1 cut(s) 92
Kpn2I TCCGGA 1 cut(s) 252
LmnI GCTCC 2 cut(s) 6, 67
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 2 cut(s) 393, 414
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 395
MboII GAAGA 1 cut(s) 310
MluCI AATT 2 cut(s) 116, 291
MluI ACGCGT 1 cut(s) 197
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 6 cut(s) 186, 202, 213, 218, 288, 413
MroI TCCGGA 1 cut(s) 252
MseI TTAA 1 cut(s) 125
MspI CCGG 2 cut(s) 253, 366
MspR9I CCNGG 2 cut(s) 81, 366
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 65, 167, 269
NciI CCSGG 1 cut(s) 366
NlaIII CATG 1 cut(s) 92
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 38, 94
PflFI GACNNNGTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 2 cut(s) 61, 169
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspPI GGNCC 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 326
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 2 cut(s) 60, 168
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 81, 366
SetI ASST 6 cut(s) 11, 178, 252, 270, 405, 419
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 116, 291
SsiI CCGC 2 cut(s) 129, 167
SspI AATATT 1 cut(s) 24
SspMI CTAG 2 cut(s) 393, 414
StyD4I CCNGG 2 cut(s) 79, 364
TaiI ACGT 1 cut(s) 252
TaqI TCGA 2 cut(s) 280, 321
TaqII GACCGA 1 cut(s) 316
TasI AATT 2 cut(s) 116, 291
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 38, 94
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 395
Tth111I GACNNNGTC 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 346
XapI RAATTY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XspI CTAG 2 cut(s) 393, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.