Rroxscaffold_1G00061690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019849
Physical Location & Seq
Forward (+)
83767918 .. 83768587
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061690.1

Sequence Viewer

Length: 444 bp
ATGTCAAGGTCGAAAAGTCAAGACGTCGACCAACGGCTGAGATTACTTGACTGTTGCTTTCAAATTTTTTGTTCACCCAACTGCTACCTTCCACGCGTCCTCTCTTCCGCCCAAATTCTTGTCGCCGGGGCGACAAACGAGTCAACCCACGCGGTCAGCAAAATGCGGCTAAACCTTATTCGTGCGTCGCCTCCACGCGTCCTCTCCTCCGCGTCCCTCTCTCGCTTGTCTATCGCTGATGTCGGCCACGTCCATCTTTGGGCCGAGCTGGCGTCTCCTTCGACTGATCATAATTTTAGTCGGGCTTTGCCCTTTTTTTTGACTCGGTCAAGAAAGGCTAGAAATTGGCTGGTCAAGGAAGGCCCAGTGGAAGCAAGTTTTGGTGTTTGGCTGGTCACCACCTCACCAAATCTAGCTAGTGACCGGTCAAAAACAAACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.32

Weight (kDa)

10.28

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019849)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314851
rosa_multiflora Rmu_sc0001673.1_g000008 Rmu_sc0008442.1_g000013
rosa_roxburghii Rroxscaffold_1G00061690 Rroxscaffold_6G00409780
rosa_samantha Rh2BG118300 Rh2DG119600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AatII GACGTC 1 cut(s) 27
AccI GTMKAC 1 cut(s) 27
AccII CGCG 4 cut(s) 96, 152, 198, 212
AciI CCGC 4 cut(s) 108, 152, 166, 210
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 2 cut(s) 63, 114
AcyI GRCGYC 2 cut(s) 24, 272
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 2 cut(s) 94, 196
AgeI ACCGGT 2 cut(s) 423, 438
AgsI TTSAA 1 cut(s) 62
AjiI CACGTC 1 cut(s) 250
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AluBI AGCT 2 cut(s) 268, 416
AluI AGCT 2 cut(s) 268, 416
Alw26I GTCTC 1 cut(s) 279
AoxI GGCC 3 cut(s) 244, 261, 361
ApoI RAATTY 2 cut(s) 63, 114
AsiGI ACCGGT 2 cut(s) 423, 438
AspS9I GGNCC 2 cut(s) 261, 362
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 3 cut(s) 66, 388, 396
BccI CCATC 1 cut(s) 261
BceAI ACGGC 1 cut(s) 50
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 3 cut(s) 339, 413, 417
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 261, 362
BmrFI CCNGG 1 cut(s) 127
BmrI ACTGGG 1 cut(s) 359
BmuI ACTGGG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 127
BsaHI GRCGYC 2 cut(s) 24, 272
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 2 cut(s) 423, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 2 cut(s) 423, 438
Bse1I ACTGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 196
Bsh1236I CGCG 4 cut(s) 96, 152, 198, 212
BshFI GGCC 3 cut(s) 246, 263, 363
BshTI ACCGGT 2 cut(s) 423, 438
BsiSI CCGG 3 cut(s) 126, 424, 439
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 279
BsmBI CGTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 3 cut(s) 246, 263, 363
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 4 cut(s) 108, 152, 166, 210
BspANI GGCC 3 cut(s) 246, 263, 363
BspCNI CTCAG 1 cut(s) 30
BspFNI CGCG 4 cut(s) 96, 152, 198, 212
BsrFI RCCGGY 2 cut(s) 423, 438
BsrI ACTGG 1 cut(s) 365
BssAI RCCGGY 2 cut(s) 423, 438
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 286
BssNI GRCGYC 2 cut(s) 24, 272
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 2 cut(s) 24, 272
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 38
BstEII GGTNACC 1 cut(s) 394
BstFNI CGCG 4 cut(s) 96, 152, 198, 212
BstKTI GATC 1 cut(s) 289
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 125
BstUI CGCG 4 cut(s) 96, 152, 198, 212
BsuRI GGCC 3 cut(s) 246, 263, 363
BtrI CACGTC 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 270
Cfr10I RCCGGY 2 cut(s) 423, 438
Cfr13I GGNCC 2 cut(s) 261, 362
CseI GACGC 5 cut(s) 85, 174, 187, 201, 261
CspAI ACCGGT 2 cut(s) 423, 438
DdeI CTNAG 1 cut(s) 38
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 97
Eco91I GGTNACC 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 394
Esp3I CGTCTC 1 cut(s) 279
FaiI YATR 1 cut(s) 291
FaqI GGGAC 1 cut(s) 199
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 3 cut(s) 339, 413, 417
GluI GCNGC 1 cut(s) 167
HaeIII GGCC 3 cut(s) 246, 263, 363
HapII CCGG 3 cut(s) 126, 424, 439
HgaI GACGC 5 cut(s) 85, 174, 187, 201, 261
Hin1I GRCGYC 2 cut(s) 24, 272
HincII GTYRAC 2 cut(s) 28, 144
HindII GTYRAC 2 cut(s) 28, 144
HinfI GANTC 2 cut(s) 140, 322
HpaII CCGG 3 cut(s) 126, 424, 439
HphI GGTGA 3 cut(s) 66, 388, 396
Hpy166II GTNNAC 3 cut(s) 28, 74, 144
Hpy188III TCNNGA 2 cut(s) 20, 330
Hpy8I GTNNAC 3 cut(s) 28, 74, 144
Hpy99I CGWCG 2 cut(s) 29, 190
HpyAV CCTTC 3 cut(s) 98, 288, 353
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 2 cut(s) 24, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 2 cut(s) 24, 249
Hsp92I GRCGYC 2 cut(s) 24, 272
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 1 cut(s) 286
LpnPI CCDG 6 cut(s) 139, 254, 335, 377, 378, 437
MaeI CTAG 3 cut(s) 339, 413, 417
MaeII ACGT 2 cut(s) 24, 249
MaeIII GTNAC 2 cut(s) 394, 419
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 1 cut(s) 96
MluCI AATT 4 cut(s) 63, 114, 292, 343
MluI ACGCGT 2 cut(s) 94, 196
MlyI GAGTC 2 cut(s) 149, 316
MnlI CCTC 6 cut(s) 110, 201, 212, 217, 227, 412
MspI CCGG 3 cut(s) 126, 424, 439
MspR9I CCNGG 1 cut(s) 127
MvnI CGCG 4 cut(s) 96, 152, 198, 212
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 127
NdeII GATC 1 cut(s) 286
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 394, 419
PflFI GACNNNGTC 1 cut(s) 325
PinAI ACCGGT 2 cut(s) 423, 438
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 2 cut(s) 148, 316
PpsI GAGTC 2 cut(s) 148, 316
PspEI GGTNACC 1 cut(s) 394
PspPI GGNCC 2 cut(s) 261, 362
PsyI GACNNNGTC 1 cut(s) 325
SalI GTCGAC 1 cut(s) 26
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 2 cut(s) 261, 362
SchI GAGTC 2 cut(s) 149, 316
ScrFI CCNGG 1 cut(s) 127
SetI ASST 8 cut(s) 11, 27, 90, 177, 252, 270, 404, 418
Sse9I AATT 4 cut(s) 63, 114, 292, 343
SsiI CCGC 4 cut(s) 108, 152, 166, 210
SspMI CTAG 3 cut(s) 339, 413, 417
StyD4I CCNGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 2 cut(s) 27, 252
TaqI TCGA 3 cut(s) 11, 27, 281
TaqII GACCGA 1 cut(s) 315
TasI AATT 4 cut(s) 63, 114, 292, 343
TauI GCSGC 1 cut(s) 169
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 2 cut(s) 394, 419
Tsp45I GTSAC 2 cut(s) 394, 419
TspRI CASTG 1 cut(s) 372
Tth111I GACNNNGTC 1 cut(s) 325
XapI RAATTY 2 cut(s) 63, 114
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 3 cut(s) 339, 413, 417
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.