RchiOBHm_Chr1g0322151

F-actin-capping proteins bind in a Ca(2 )-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019853
Physical Location & Seq
Forward (+)
9617132 .. 9618772
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55217

Sequence Viewer

Length: 354 bp
ATGGCGGACGAAGAGGAATCTGAGCTAAGCGAGAAGCAGAAGATTGATATAGCCAAGTGGTTCCTCCTCAACTCTCCTCCTGGTGAAATCCAATTCGTCGCCGAACATGTGAAGGCGGTAGTCAACGACGACGTTTTGTACGAAGAAGCAGCTTCAGAGGCTTTCCCACTGTATAACAAATCACACATGATTTCGCTAGAAATGCCTGGTGGAATTGGAGATGTTCTAGTTACATCTTTCGGTGAGCTCCGTGGGACTGAGTACCTTGATCCCAAGACTGCTCATGTTGCTGTCGTTGACCATATCAAACAGGTCTATTCAAAAAAAAATTGGTTCAGGTTTGTACAGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
F-actin_cap_A

Protein Analysis

117

Amino Acids

13.24

Weight (kDa)

4.79

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-actin_cap_A PF01267 18 - 108 1.7e-19 F-actin capping protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019853)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322051 RchiOBHm_Chr1g0322151
rosa_multiflora Rmu_co8251333.1_g000001
rosa_samantha Rh1AG049100 Rh1AG050000 Rh3AG069300
rosa_wichuraiana Rw1G004560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 116
AclWI GGATC 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 3 cut(s) 140, 263, 345
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 1 cut(s) 321
AjiI CACGTC 1 cut(s) 351
AjnI CCWGG 2 cut(s) 79, 205
AluBI AGCT 3 cut(s) 25, 152, 247
AluI AGCT 3 cut(s) 25, 152, 247
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 95, 254
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 161
BciT130I CCWGG 2 cut(s) 81, 207
BfaI CTAG 2 cut(s) 197, 227
BisI GCNGC 1 cut(s) 150
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 81, 207
BmgBI CACGTC 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 2 cut(s) 81, 207
Bpu1102I GCTNAGC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 250
BseBI CCWGG 2 cut(s) 81, 207
BseDI CCNNGG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 12, 249
BseRI GAGGAG 2 cut(s) 56, 66
BseXI GCAGC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 1 cut(s) 268
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 2 cut(s) 5, 116
BspCNI CTCAG 2 cut(s) 13, 250
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 1 cut(s) 263
BsrGI TGTACA 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 81, 207
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 6
BstAUI TGTACA 1 cut(s) 343
BstDEI CTNAG 3 cut(s) 21, 26, 258
BstDSI CCRYGG 1 cut(s) 250
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 3 cut(s) 158, 202, 287
BstNI CCWGG 2 cut(s) 81, 207
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 2 cut(s) 79, 205
BstV1I GCAGC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 167
Csp6I GTAC 3 cut(s) 139, 262, 344
CviAII CATG 3 cut(s) 107, 187, 284
CviJI RGCY 5 cut(s) 25, 53, 152, 161, 247
CviKI_1 RGCY 5 cut(s) 25, 53, 152, 161, 247
CviQI GTAC 3 cut(s) 139, 262, 344
DdeI CTNAG 3 cut(s) 21, 26, 258
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 79, 205
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 3 cut(s) 110, 190, 287
FaiI YATR 6 cut(s) 50, 108, 174, 188, 285, 303
FaqI GGGAC 1 cut(s) 268
FatI CATG 3 cut(s) 106, 186, 283
Fnu4HI GCNGC 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 2 cut(s) 197, 227
GluI GCNGC 1 cut(s) 150
Hin1II CATG 3 cut(s) 110, 190, 287
HincII GTYRAC 2 cut(s) 124, 298
HindII GTYRAC 2 cut(s) 124, 298
HinfI GANTC 1 cut(s) 17
HphI GGTGA 2 cut(s) 95, 254
Hpy166II GTNNAC 2 cut(s) 124, 298
Hpy188I TCNGA 2 cut(s) 22, 157
Hpy8I GTNNAC 2 cut(s) 124, 298
Hpy99I CGWCG 3 cut(s) 101, 131, 134
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 2 cut(s) 132, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 202, 287
HpyF3I CTNAG 3 cut(s) 21, 26, 258
HpySE526I ACGT 2 cut(s) 132, 350
Hsp92II CATG 3 cut(s) 110, 190, 287
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 6 cut(s) 66, 93, 192, 219, 296, 322
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 2 cut(s) 197, 227
MaeII ACGT 2 cut(s) 132, 350
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 3 cut(s) 23, 52, 155
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 3 cut(s) 92, 213, 328
MnlI CCTC 5 cut(s) 7, 74, 77, 87, 151
MspR9I CCNGG 2 cut(s) 81, 207
MvaI CCWGG 2 cut(s) 81, 207
MwoI GCNNNNNNNGC 3 cut(s) 158, 202, 287
NdeII GATC 1 cut(s) 268
NlaIII CATG 3 cut(s) 110, 190, 287
NlaIV GGNNCC 1 cut(s) 62
NspI RCATGY 1 cut(s) 110
PciI ACATGT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 151
PscI ACATGT 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 79, 205
PspGI CCWGG 2 cut(s) 79, 205
PspN4I GGNNCC 1 cut(s) 62
RsaI GTAC 3 cut(s) 140, 263, 345
RsaNI GTAC 3 cut(s) 139, 262, 344
SacI GAGCTC 1 cut(s) 249
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 268
ScrFI CCNGG 2 cut(s) 81, 207
SduI GDGCHC 1 cut(s) 249
SetI ASST 8 cut(s) 27, 135, 154, 249, 267, 315, 341, 353
Sse9I AATT 3 cut(s) 92, 213, 328
SsiI CCGC 2 cut(s) 5, 116
SspMI CTAG 2 cut(s) 197, 227
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 79, 205
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 2 cut(s) 135, 353
TasI AATT 3 cut(s) 92, 213, 328
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 1 cut(s) 174
TseI GCWGC 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 174
XceI RCATGY 1 cut(s) 110
XspI CTAG 2 cut(s) 197, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.