Rh1AG049100

F-actin-capping proteins bind in a Ca(2 )-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0019853
Physical Location & Seq
Reverse (-)
8317936 .. 8320678
2743 bp
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UTR
Exon/CDS
Intron
Rh1AG049100.1

Sequence Viewer

Length: 390 bp
ATGGCGGACGAAGAGGAATCTGAGCTAAGCGAGAAGCAGAAGATTGATATAGCCAAGTGGTTCCTCCTCAACTCTCCTCCTGGTGAAATCCAATTCGTCGCCGAAGATGTGAAGGCGGTAGTCAACGACGACATTTTGTACGAAGAAGCAGCCTCAGAGGCTTTCCCACTGTATAACAAATCACACATGATTTCGCTAGAAATGCCTGGTGGAATTGGAGATGTTCTAGTTACATCTTTCGGTGAGCTCCGTGGGACTAAGTACCTTGATCCCAGGACTGCTCATGTTGCTGTCGTTGACCATATCAAACAGGTTTGTACAGACGTGAGACCTGCATTGGATGAGGAACTTCCATTCGCATATGTTGAGGAATACAGAAGATCGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
F-actin_cap_A

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

4.44

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-actin_cap_A PF01267 18 - 127 3.9e-23 F-actin capping protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019853)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322051 RchiOBHm_Chr1g0322151
rosa_multiflora Rmu_co8251333.1_g000001
rosa_samantha Rh1AG049100 Rh1AG050000 Rh3AG069300
rosa_wichuraiana Rw1G004560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 340
AciI CCGC 2 cut(s) 5, 116
AclWI GGATC 1 cut(s) 263
AfaI GTAC 3 cut(s) 140, 263, 319
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 3 cut(s) 79, 205, 272
AluBI AGCT 2 cut(s) 25, 247
AluI AGCT 2 cut(s) 25, 247
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 95, 254
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 161
BciT130I CCWGG 3 cut(s) 81, 207, 274
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 2 cut(s) 197, 227
BfuAI ACCTGC 1 cut(s) 340
BglI GCCNNNNNGGC 1 cut(s) 158
BisI GCNGC 1 cut(s) 150
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 3 cut(s) 81, 207, 274
BmgBI CACGTC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 3 cut(s) 81, 207, 274
Bpu1102I GCTNAGC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 250, 272
BseBI CCWGG 3 cut(s) 81, 207, 274
BseDI CCNNGG 2 cut(s) 250, 272
BseGI GGATG 1 cut(s) 346
BseMII CTCAG 2 cut(s) 12, 168
BseRI GAGGAG 2 cut(s) 56, 66
BseXI GCAGC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 317
Bsp143I GATC 2 cut(s) 268, 380
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 2 cut(s) 5, 116
BspCNI CTCAG 2 cut(s) 13, 167
BspLI GGNNCC 1 cut(s) 62
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 322
BsrGI TGTACA 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 250, 272
BssMI GATC 2 cut(s) 268, 380
Bst2UI CCWGG 3 cut(s) 81, 207, 274
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 6
BstAUI TGTACA 1 cut(s) 317
BstDEI CTNAG 4 cut(s) 21, 26, 154, 258
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 2 cut(s) 271, 383
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 2 cut(s) 268, 380
BstMWI GCNNNNNNNGC 3 cut(s) 158, 202, 287
BstNI CCWGG 3 cut(s) 81, 207, 274
BstSCI CCNGG 3 cut(s) 79, 205, 272
BstV1I GCAGC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 167
BveI ACCTGC 1 cut(s) 340
Csp6I GTAC 3 cut(s) 139, 262, 318
CviAII CATG 2 cut(s) 187, 284
CviJI RGCY 5 cut(s) 25, 53, 152, 161, 247
CviKI_1 RGCY 5 cut(s) 25, 53, 152, 161, 247
CviQI GTAC 3 cut(s) 139, 262, 318
DdeI CTNAG 4 cut(s) 21, 26, 154, 258
DpnI GATC 2 cut(s) 270, 382
DpnII GATC 2 cut(s) 268, 380
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 3 cut(s) 79, 205, 272
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 2 cut(s) 190, 287
FaiI YATR 7 cut(s) 50, 174, 188, 285, 303, 361, 363
FaqI GGGAC 1 cut(s) 268
FatI CATG 2 cut(s) 186, 283
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 2 cut(s) 197, 227
GluI GCNGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 190, 287
HincII GTYRAC 2 cut(s) 124, 298
HindII GTYRAC 2 cut(s) 124, 298
HinfI GANTC 1 cut(s) 17
HphI GGTGA 2 cut(s) 95, 254
Hpy166II GTNNAC 2 cut(s) 124, 298
Hpy188I TCNGA 2 cut(s) 22, 157
Hpy8I GTNNAC 2 cut(s) 124, 298
Hpy99I CGWCG 2 cut(s) 101, 131
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 202, 287
HpyF3I CTNAG 4 cut(s) 21, 26, 154, 258
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 2 cut(s) 190, 287
Kzo9I GATC 2 cut(s) 268, 380
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 8 cut(s) 66, 93, 192, 219, 259, 286, 296, 345
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 2 cut(s) 197, 227
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 270, 382
MboI GATC 2 cut(s) 268, 380
MboII GAAGA 5 cut(s) 23, 52, 116, 155, 390
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 2 cut(s) 92, 213
MnlI CCTC 8 cut(s) 7, 74, 77, 87, 151, 163, 337, 361
MspR9I CCNGG 3 cut(s) 81, 207, 274
MvaI CCWGG 3 cut(s) 81, 207, 274
MwoI GCNNNNNNNGC 3 cut(s) 158, 202, 287
NdeI CATATG 1 cut(s) 361
NdeII GATC 2 cut(s) 268, 380
NlaIII CATG 2 cut(s) 190, 287
NlaIV GGNNCC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 3 cut(s) 79, 205, 272
PspGI CCWGG 3 cut(s) 79, 205, 272
PspN4I GGNNCC 1 cut(s) 62
RsaI GTAC 3 cut(s) 140, 263, 319
RsaNI GTAC 3 cut(s) 139, 262, 318
SacI GAGCTC 1 cut(s) 249
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 2 cut(s) 268, 380
ScrFI CCNGG 3 cut(s) 81, 207, 274
SduI GDGCHC 1 cut(s) 249
SetI ASST 6 cut(s) 27, 249, 267, 315, 327, 334
Sse9I AATT 2 cut(s) 92, 213
SsiI CCGC 2 cut(s) 5, 116
SspMI CTAG 2 cut(s) 197, 227
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 3 cut(s) 79, 205, 272
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 327
TasI AATT 2 cut(s) 92, 213
TatI WGTACW 1 cut(s) 317
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 1 cut(s) 174
TseI GCWGC 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 174
XspI CTAG 2 cut(s) 197, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.