Rw1G004560

F-actin-capping proteins bind in a Ca(2 )-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0019853
Physical Location & Seq
Forward (+)
8743869 .. 8745459
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004560.1

Sequence Viewer

Length: 375 bp
ATGGCGGACGAAGAGGAATCTGAGCTAAGCGAGAAGCAGAAGATTGATATAGCCAAGTGGTTCCTCCTCAACTCTCTTCCTGGTGAAATCCAATTCGTCGCCGAAGATGTGAAGGCGGTAGTCAACGACGACGTTTTGTACGAAGAAGCAGCTTCAGAGGCTTTCCCACTGTATAACAAATCACACATGATTTCGCTAGAAATGCCTGGTGGAATTGGAGATGTTCTAGTTACATCTTTCGGTGAGCTCCGTGGGACTGAGTACCTTGATCCCAAGACTGCTCATGTTGCTGTCGTTGACCATATCAAACAGGTTTGTACAGACGTGAGACCTGCATTGGATGAGGAACTTCCATCCGCATATGTTGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
F-actin_cap_A

Protein Analysis

124

Amino Acids

13.75

Weight (kDa)

4.24

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-actin_cap_A PF01267 18 - 117 7.3e-21 F-actin capping protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019853)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322051 RchiOBHm_Chr1g0322151
rosa_multiflora Rmu_co8251333.1_g000001
rosa_samantha Rh1AG049100 Rh1AG050000 Rh3AG069300
rosa_wichuraiana Rw1G004560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 340
AciI CCGC 3 cut(s) 5, 116, 357
AclWI GGATC 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 3 cut(s) 140, 263, 319
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 2 cut(s) 79, 205
AluBI AGCT 3 cut(s) 25, 152, 247
AluI AGCT 3 cut(s) 25, 152, 247
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 95, 254
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 161
BccI CCATC 1 cut(s) 361
BciT130I CCWGG 2 cut(s) 81, 207
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 2 cut(s) 197, 227
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 1 cut(s) 150
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 81, 207
BmgBI CACGTC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 2 cut(s) 81, 207
Bpu1102I GCTNAGC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 250
BseBI CCWGG 2 cut(s) 81, 207
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 346, 353
BseMII CTCAG 2 cut(s) 12, 249
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 317
Bsp143I GATC 1 cut(s) 268
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 3 cut(s) 5, 116, 357
BspCNI CTCAG 2 cut(s) 13, 250
BspLI GGNNCC 1 cut(s) 62
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 322
BsrGI TGTACA 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 81, 207
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 6, 81
BstAUI TGTACA 1 cut(s) 317
BstDEI CTNAG 3 cut(s) 21, 26, 258
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 346, 353
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 3 cut(s) 158, 202, 287
BstNI CCWGG 2 cut(s) 81, 207
BstSCI CCNGG 2 cut(s) 79, 205
BstV1I GCAGC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 2 cut(s) 346, 353
BtsIMutI CAGTG 1 cut(s) 167
BveI ACCTGC 1 cut(s) 340
Csp6I GTAC 3 cut(s) 139, 262, 318
CviAII CATG 2 cut(s) 187, 284
CviJI RGCY 5 cut(s) 25, 53, 152, 161, 247
CviKI_1 RGCY 5 cut(s) 25, 53, 152, 161, 247
CviQI GTAC 3 cut(s) 139, 262, 318
DdeI CTNAG 3 cut(s) 21, 26, 258
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 6, 81
EarI CTCTTC 2 cut(s) 6, 81
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 79, 205
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 2 cut(s) 190, 287
FaiI YATR 7 cut(s) 50, 174, 188, 285, 303, 361, 363
FaqI GGGAC 1 cut(s) 268
FatI CATG 2 cut(s) 186, 283
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 340, 353
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 2 cut(s) 197, 227
GluI GCNGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 190, 287
HincII GTYRAC 2 cut(s) 124, 298
HindII GTYRAC 2 cut(s) 124, 298
HinfI GANTC 1 cut(s) 17
HphI GGTGA 2 cut(s) 95, 254
Hpy166II GTNNAC 2 cut(s) 124, 298
Hpy188I TCNGA 2 cut(s) 22, 157
Hpy8I GTNNAC 2 cut(s) 124, 298
Hpy99I CGWCG 3 cut(s) 101, 131, 134
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 2 cut(s) 132, 324
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 202, 287
HpyF3I CTNAG 3 cut(s) 21, 26, 258
HpySE526I ACGT 2 cut(s) 132, 324
Hsp92II CATG 2 cut(s) 190, 287
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 6 cut(s) 66, 93, 192, 219, 296, 345
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 2 cut(s) 197, 227
MaeII ACGT 2 cut(s) 132, 324
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 5 cut(s) 23, 52, 68, 116, 155
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 2 cut(s) 92, 213
MnlI CCTC 5 cut(s) 7, 74, 77, 151, 337
MspR9I CCNGG 2 cut(s) 81, 207
MvaI CCWGG 2 cut(s) 81, 207
MwoI GCNNNNNNNGC 3 cut(s) 158, 202, 287
NdeI CATATG 1 cut(s) 361
NdeII GATC 1 cut(s) 268
NlaIII CATG 2 cut(s) 190, 287
NlaIV GGNNCC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 79, 205
PspGI CCWGG 2 cut(s) 79, 205
PspN4I GGNNCC 1 cut(s) 62
RsaI GTAC 3 cut(s) 140, 263, 319
RsaNI GTAC 3 cut(s) 139, 262, 318
SacI GAGCTC 1 cut(s) 249
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 268
ScrFI CCNGG 2 cut(s) 81, 207
SduI GDGCHC 1 cut(s) 249
SetI ASST 8 cut(s) 27, 135, 154, 249, 267, 315, 327, 334
Sse9I AATT 2 cut(s) 92, 213
SsiI CCGC 3 cut(s) 5, 116, 357
SspMI CTAG 2 cut(s) 197, 227
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 79, 205
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 2 cut(s) 135, 327
TasI AATT 2 cut(s) 92, 213
TatI WGTACW 1 cut(s) 317
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 1 cut(s) 174
TseI GCWGC 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 174
XspI CTAG 2 cut(s) 197, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.