Rh3AG069300

F-actin-capping proteins bind in a Ca(2 )-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0019853
Physical Location & Seq
Forward (+)
4821834 .. 4822492
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG069300.1

Sequence Viewer

Length: 342 bp
ATGGCGGACGAAGAAGAATCAGAGCTAAGCGAGAAGCAGAAGATTGATATAGCCAAGTGGTTCCTCCTCAACTCTCCTCCCGGTGAAATCCAATTCGTCGCCGAAGATGTGAAGGCGGTAGTCAACGACGACGTTTTGTACGAAGAAGCAGCCTCAGTGGCTTTTCCGCTGTATAACAAATCACACATGATTTCGCTGGAAATGCCTGGCGGAATTGGAGATGTTCTAGTTACATCTTTCGGAGAGCTCCGTGGGAATGAGTACCTTGATCCCAGGACTGCTCATGTTGCTGTAGTTGACCATATCAAACAGGCAAGTCTTGTACTTTTCCTCCATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
F-actin_cap_A

Protein Analysis

113

Amino Acids

12.59

Weight (kDa)

4.47

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-actin_cap_A PF01267 18 - 105 6e-20 F-actin capping protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019853)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322051 RchiOBHm_Chr1g0322151
rosa_multiflora Rmu_co8251333.1_g000001
rosa_samantha Rh1AG049100 Rh1AG050000 Rh3AG069300
rosa_wichuraiana Rw1G004560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 116, 167, 210
AclWI GGATC 1 cut(s) 263
AfaI GTAC 3 cut(s) 140, 263, 324
AjnI CCWGG 2 cut(s) 205, 272
AluBI AGCT 2 cut(s) 25, 247
AluI AGCT 2 cut(s) 25, 247
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 95
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 161
BciT130I CCWGG 2 cut(s) 207, 274
BcnI CCSGG 1 cut(s) 81
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 291
BglI GCCNNNNNGGC 1 cut(s) 158
BisI GCNGC 1 cut(s) 150
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 3 cut(s) 81, 207, 274
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 3 cut(s) 81, 207, 274
Bpu1102I GCTNAGC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 250, 272
BsaXI ACNNNNNCTCC 1 cut(s) 315
BseBI CCWGG 2 cut(s) 207, 274
BseDI CCNNGG 2 cut(s) 250, 272
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 56, 66
BseXI GCAGC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 268
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 4 cut(s) 5, 116, 167, 210
BspCNI CTCAG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 250, 272
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 207, 274
BstDEI CTNAG 2 cut(s) 26, 154
BstDSI CCRYGG 1 cut(s) 250
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 3 cut(s) 158, 202, 287
BstNI CCWGG 2 cut(s) 207, 274
BstSCI CCNGG 3 cut(s) 79, 205, 272
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 162
Csp6I GTAC 3 cut(s) 139, 262, 323
CviAII CATG 2 cut(s) 187, 284
CviJI RGCY 5 cut(s) 25, 53, 152, 161, 247
CviKI_1 RGCY 5 cut(s) 25, 53, 152, 161, 247
CviQI GTAC 3 cut(s) 139, 262, 323
DdeI CTNAG 2 cut(s) 26, 154
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EciI GGCGGA 2 cut(s) 20, 225
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 205, 272
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 2 cut(s) 190, 287
FaiI YATR 5 cut(s) 50, 174, 188, 285, 303
FatI CATG 2 cut(s) 186, 283
Fnu4HI GCNGC 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 150
HapII CCGG 1 cut(s) 81
Hin1II CATG 2 cut(s) 190, 287
HincII GTYRAC 2 cut(s) 124, 298
HindII GTYRAC 2 cut(s) 124, 298
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 124, 298
Hpy188I TCNGA 2 cut(s) 22, 242
Hpy8I GTNNAC 2 cut(s) 124, 298
Hpy99I CGWCG 3 cut(s) 101, 131, 134
HpyAV CCTTC 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 202, 287
HpyF3I CTNAG 2 cut(s) 26, 154
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 190, 287
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 7 cut(s) 94, 182, 192, 219, 259, 286, 296
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 5 cut(s) 23, 26, 52, 116, 155
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 2 cut(s) 92, 213
MnlI CCTC 5 cut(s) 74, 77, 87, 163, 341
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 3 cut(s) 81, 207, 274
MvaI CCWGG 2 cut(s) 207, 274
MwoI GCNNNNNNNGC 3 cut(s) 158, 202, 287
NciI CCSGG 1 cut(s) 81
NdeII GATC 1 cut(s) 268
NlaIII CATG 2 cut(s) 190, 287
NlaIV GGNNCC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 205, 272
PspGI CCWGG 2 cut(s) 205, 272
PspN4I GGNNCC 1 cut(s) 62
RsaI GTAC 3 cut(s) 140, 263, 324
RsaNI GTAC 3 cut(s) 139, 262, 323
SacI GAGCTC 1 cut(s) 249
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 268
ScrFI CCNGG 3 cut(s) 81, 207, 274
SduI GDGCHC 1 cut(s) 249
SetI ASST 4 cut(s) 27, 135, 249, 267
SfcI CTRYAG 1 cut(s) 291
Sse9I AATT 2 cut(s) 92, 213
SsiI CCGC 4 cut(s) 5, 116, 167, 210
SspMI CTAG 1 cut(s) 227
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 3 cut(s) 79, 205, 272
TaiI ACGT 1 cut(s) 135
TasI AATT 2 cut(s) 92, 213
TatI WGTACW 1 cut(s) 322
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 1 cut(s) 162
TseI GCWGC 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 162
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.