RchiOBHm_Chr1g0323051

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
10638557 .. 10638899
343 bp
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UTR
Exon/CDS
Intron
PRQ55299

Sequence Viewer

Length: 174 bp
ATGTGCACAGGAACGGGAAAAAGATGCAGTGGGTGTGCGTTGGCTTGTTTGCGCAGCAGGGATGCTTCGGTGGCAGCAGGCTGGAACGCAGGGCTGCAGGAAGGGGGGCAGCAGGGGCTGCTGTGCAAGGTTGCAAGCACACGGGTGCTCGGGCTGCAGCGAAGGCTCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

5.84

Weight (kDa)

9.75

Isoelectric Point (pI)

74.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 53
AleI CACNNNNGTG 1 cut(s) 143
Alw21I GWGCWC 2 cut(s) 8, 150
Alw44I GTGCAC 1 cut(s) 4
AlwNI CAGNNNCTG 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 149
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 7 cut(s) 54, 74, 94, 109, 118, 154, 157
AspLEI GCGC 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 8
Bbv12I GWGCWC 2 cut(s) 8, 150
BbvI GCAGC 7 cut(s) 66, 81, 86, 105, 121, 141, 169
BfaI CTAG 1 cut(s) 172
BfmI CTRYAG 2 cut(s) 95, 155
BisI GCNGC 7 cut(s) 55, 75, 95, 110, 119, 155, 158
BlsI GCNGC 7 cut(s) 56, 76, 96, 111, 120, 156, 159
BmeT110I CYCGRG 1 cut(s) 149
BmsI GCATC 2 cut(s) 14, 52
BseGI GGATG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 7 cut(s) 66, 81, 86, 105, 121, 141, 169
BsiHKAI GWGCWC 2 cut(s) 8, 150
BsiHKCI CYCGRG 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 8, 150
BspMAI CTGCAG 2 cut(s) 99, 159
BstAPI GCANNNNNTGC 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 79, 136
BstF5I GGATG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 54
BstMWI GCNNNNNNNGC 5 cut(s) 71, 115, 118, 154, 163
BstSFI CTRYAG 2 cut(s) 95, 155
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 7 cut(s) 66, 81, 86, 105, 121, 141, 169
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 2 cut(s) 79, 136
CaiI CAGNNNCTG 1 cut(s) 118
CfoI GCGC 1 cut(s) 54
CviJI RGCY 7 cut(s) 44, 81, 94, 118, 154, 166, 171
CviKI_1 RGCY 7 cut(s) 44, 81, 94, 118, 154, 166, 171
Eco88I CYCGRG 1 cut(s) 149
Fnu4HI GCNGC 7 cut(s) 55, 75, 95, 110, 119, 155, 158
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 7 cut(s) 55, 75, 95, 110, 119, 155, 158
FspBI CTAG 1 cut(s) 172
FspI TGCGCA 1 cut(s) 53
GlaI GCGC 1 cut(s) 53
GluI GCNGC 7 cut(s) 55, 75, 95, 110, 119, 155, 158
HhaI GCGC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 95, 156
HpyCH4V TGCA 6 cut(s) 6, 27, 97, 126, 134, 157
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 115, 118, 154, 163
HspAI GCGC 1 cut(s) 52
LpnPI CCDG 6 cut(s) 43, 63, 67, 75, 83, 98
Lsp1109I GCAGC 7 cut(s) 66, 81, 86, 105, 121, 141, 169
LweI GCATC 2 cut(s) 14, 52
MaeI CTAG 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 8, 150
MslI CAYNNNNRTG 1 cut(s) 143
MwoI GCNNNNNNNGC 5 cut(s) 71, 115, 118, 154, 163
NmeAIII GCCGAG 1 cut(s) 147
NsbI TGCGCA 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 143
PkrI GCNGC 7 cut(s) 56, 76, 96, 111, 120, 156, 159
PstI CTGCAG 2 cut(s) 99, 159
PstNI CAGNNNCTG 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 143
SatI GCNGC 7 cut(s) 55, 75, 95, 110, 119, 155, 158
SduI GDGCHC 2 cut(s) 8, 150
SetI ASST 1 cut(s) 132
SfaNI GCATC 2 cut(s) 14, 52
SfcI CTRYAG 2 cut(s) 95, 155
SmiMI CAYNNNNRTG 1 cut(s) 143
SspMI CTAG 1 cut(s) 172
TscAI CASTG 1 cut(s) 34
TseI GCWGC 7 cut(s) 54, 74, 94, 109, 118, 154, 157
TspRI CASTG 1 cut(s) 34
VneI GTGCAC 1 cut(s) 4
XspI CTAG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.