Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002146.1

Orthogroup ID

OG0019334

Physical Location & Seq

Genomic Coordinates Forward (+)

9547 .. 10071

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002146.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgggcaaaggaggtggttgtgtgcccagcaagaataggccaccagcaggcgtttccggcgctgatgttccgaacccaaaaagcaatgatcttgttccgggaacgctgttgtctgagatgttggagcagatgaaagtgcccaagacggatgatcatggggtgcctgtgatagtgcctgcgagactggtggaggttgatggggtgttgttcgggtttcctacccgatatgggtcaatggctgctcagttgaaggcgtttttcgactccacgggggagctgtggagggagcagaagcttgttgggttgcctgctggttctttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

107

Amino Acids

11.23

Weight (kDa)

6.55

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019334)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323051 RchiOBHm_Chr2g0156421 RchiOBHm_Chr3g0481411 RchiOBHm_Chr3g0486151 RchiOBHm_Chr4g0413911
rosa_multiflora	Rmu_sc0002146.1_g000003 Rmu_sc0010560.1_g000006
rosa_rugosa	Rorug05G0461400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AfiI	CCNNNNNNNGG	2 cut(s)	47, 228
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	2 cut(s)	277, 295
AluI	AGCT	2 cut(s)	277, 295
Alw26I	GTCTC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	99
BaeGI	GKGCMC	2 cut(s)	27, 141
BanI	GGYRCC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	191
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	175
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 228
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	47, 228
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	105, 257
BseNI	ACTGG	1 cut(s)	189
BseSI	GKGCMC	2 cut(s)	27, 141
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	40
BshNI	GGYRCC	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	57, 98
BslI	CCNNNNNNNGG	2 cut(s)	47, 228
BsmAI	GTCTC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	27, 141
Bsp143I	GATC	2 cut(s)	88, 151
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	2 cut(s)	106, 256
BspLI	GGNNCC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	88, 151
BstC8I	GCNNGC	3 cut(s)	49, 177, 309
BstDEI	CTNAG	2 cut(s)	114, 243
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	91, 154
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	88, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	97
BstSLI	GKGCMC	2 cut(s)	27, 141
BstV1I	GCAGC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	3 cut(s)	49, 177, 309
CfoI	GCGC	1 cut(s)	62
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	4 cut(s)	40, 239, 277, 295
CviKI_1	RGCY	4 cut(s)	40, 239, 277, 295
DdeI	CTNAG	2 cut(s)	114, 243
DpnI	GATC	2 cut(s)	90, 153
DpnII	GATC	2 cut(s)	88, 151
FaeI	CATG	1 cut(s)	158
FaiI	YATR	2 cut(s)	156, 228
FatI	CATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	240
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	2 cut(s)	57, 98
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	2 cut(s)	57, 98
Hpy188I	TCNGA	2 cut(s)	72, 115
HpyAV	CCTTC	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	2 cut(s)	114, 243
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	88, 151
LmnI	GCTCC	3 cut(s)	124, 274, 286
LpnPI	CCDG	9 cut(s)	33, 40, 57, 70, 111, 170, 177, 189, 297
Lsp1109I	GCAGC	1 cut(s)	226
MalI	GATC	2 cut(s)	90, 153
MboI	GATC	2 cut(s)	88, 151
MhlI	GDGCHC	2 cut(s)	27, 141
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	3 cut(s)	5, 184, 276
MspI	CCGG	2 cut(s)	57, 98
MspR9I	CCNGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	88, 151
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	162
PfoI	TCCNGGA	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	162
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	88, 151
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	27, 141
SetI	ASST	4 cut(s)	16, 195, 279, 297
StyD4I	CCNGG	1 cut(s)	97
TaqI	TCGA	1 cut(s)	261
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.