Rorug05G0461400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008198
Physical Location & Seq
Forward (+)
63508051 .. 63511020
2970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0461400.1

Sequence Viewer

Length: 1050 bp
ATGCTTGAAACACAGAACCGGAGCAATCCCCTAAGTCGGTCCAAGCTAATTGGCCGTTGCATAGTCTCCTCTATCTTCGTCTTTCTCACTCACTTGGCTCTCTCAGTGATCCCTCGCTTCTTCTCCGCCTTCTCCTTTCTAACCCAACTAGCTCTCTCGGCTCTGCTGCTTCTCCTGCTCGTGGGTTTTGGCGGATGGTGTAGAAGAACGCTTCTTAGAGCAAAAGCTTCGGCTCCGGCTTTGGTCTTCTTCAATATTCTCTTCATTTGGGGATTTTACTTCTCTGTTATCCGACCAGCTGTGACGCAACTAAACGATGCCGTTTTCAACTGTGGAGTTGTGTTCCTGTTTATTGGTCTCTATAGTATCATAACAAGTGACCCTGGCATTGTTACAAATGGGTCTGCCTCTCCAGACCAGCCTATGGAGAGCTCACTTTCTCAAGTTGATAAGGAGTTGGAGCCCTTAGCAAGTGGTTTAGGCCATGAATCAACTCAAGATTCAGGTTTGTTGATGAGGGTTAGATATTGCGAAACCTGCAAGGCATACATAAAGGGTCTTGACCATCATTGTCCTGCTTTTGGAAATTGTATAGGCCAAAATAATCATCCCCTTTTCTTAATTCTTCTGTTTGGACTTATTGTTACCGAAGCTTCTTATCTAGTGTGCTCGTCACTCTTTGCGGCCAAATCCAGGATCTTGGATAGACCCTCAGAGGTAGGTTATTGCACTGTGCAACTCAGCCAACTAATGTATATCAGCACTATGACTCAGCCAACTAATCTTACTCTTTCTGAAAATTTAGCTGTTAGCACAATTCTGTTCACCATTCTCCAACTGCTATGGCAGGTGGTCTTTTTGATATGGCACATATATTGTTTATGCGTGAACATCAGAACTGATGAGTGGATAAAATGGAAGAAGTATCCAGAGTTCCAACTTGTTATTCCACCCGAACCAGGACAAAGCTTCAGAAATATTAGGTTCTGGAATCCATATGACAAAGGCATTGTACAGAATGTGAAGGAGTTTCTAGCCATCCAGCATTAA

Protein Analysis

349

Amino Acids

39.31

Weight (kDa)

8.46

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 172 - 307 1.1e-19 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 838
Acc36I ACCTGC 2 cut(s) 545, 838
AccB7I CCANNNNNTGG 1 cut(s) 424
AciI CCGC 3 cut(s) 126, 192, 683
AclWI GGATC 2 cut(s) 103, 704
AcoI YGGCCR 2 cut(s) 52, 684
AcsI RAATTY 1 cut(s) 799
AcuI CTGAAG 1 cut(s) 955
AfaI GTAC 1 cut(s) 1014
AfiI CCNNNNNNNGG 6 cut(s) 36, 181, 424, 581, 693, 959
AgsI TTSAA 3 cut(s) 8, 253, 328
AjnI CCWGG 3 cut(s) 382, 692, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 930, 962
AluBI AGCT 8 cut(s) 46, 152, 227, 299, 432, 653, 806, 969
AluI AGCT 8 cut(s) 46, 152, 227, 299, 432, 653, 806, 969
Alw21I GWGCWC 2 cut(s) 434, 671
Alw26I GTCTC 2 cut(s) 70, 362
AlwI GGATC 2 cut(s) 103, 704
AoxI GGCC 4 cut(s) 52, 481, 595, 684
ApeKI GCWGC 1 cut(s) 166
ApoI RAATTY 1 cut(s) 799
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 817
AvaII GGWCC 1 cut(s) 39
BanII GRGCYC 2 cut(s) 434, 465
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 434, 671
BbvI GCAGC 1 cut(s) 153
BccI CCATC 3 cut(s) 189, 573, 1046
BceAI ACGGC 2 cut(s) 39, 305
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 3 cut(s) 384, 694, 960
BciVI GTATCC 1 cut(s) 936
BcoDI GTCTC 2 cut(s) 70, 362
BfaI CTAG 3 cut(s) 149, 662, 1034
BfmI CTRYAG 1 cut(s) 361
BfuAI ACCTGC 2 cut(s) 545, 838
BfuI GTATCC 1 cut(s) 936
BisI GCNGC 2 cut(s) 167, 684
BlsI GCNGC 2 cut(s) 168, 685
Bme1390I CCNGG 3 cut(s) 384, 694, 960
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 234, 462
BmrFI CCNGG 3 cut(s) 384, 694, 960
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 396
Bpu10I CCTNAGC 1 cut(s) 466
BpuEI CTTGAG 2 cut(s) 426, 480
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 1 cut(s) 18
Bsc4I CCNNNNNNNGG 6 cut(s) 36, 181, 424, 581, 693, 959
BseBI CCWGG 3 cut(s) 384, 694, 960
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 3 cut(s) 200, 607, 1038
BseLI CCNNNNNNNGG 6 cut(s) 36, 181, 424, 581, 693, 959
BseMII CTCAG 4 cut(s) 117, 726, 754, 785
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 153
BshFI GGCC 4 cut(s) 54, 483, 597, 686
BsiHKAI GWGCWC 2 cut(s) 434, 671
BsiSI CCGG 2 cut(s) 19, 236
BslI CCNNNNNNNGG 6 cut(s) 36, 181, 424, 581, 693, 959
BsmAI GTCTC 2 cut(s) 70, 362
BsnI GGCC 4 cut(s) 54, 483, 597, 686
Bso31I GGTCTC 1 cut(s) 362
Bsp1286I GDGCHC 3 cut(s) 434, 465, 671
Bsp1407I TGTACA 1 cut(s) 1012
Bsp143I GATC 2 cut(s) 108, 696
BspACI CCGC 3 cut(s) 126, 192, 683
BspANI GGCC 4 cut(s) 54, 483, 597, 686
BspCNI CTCAG 4 cut(s) 116, 725, 753, 784
BspLI GGNNCC 2 cut(s) 234, 462
BspMI ACCTGC 2 cut(s) 545, 838
BspPI GGATC 2 cut(s) 103, 704
BspTNI GGTCTC 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 1012
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 2 cut(s) 108, 696
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 3 cut(s) 384, 694, 960
Bst4CI ACNGT 2 cut(s) 332, 733
Bst6I CTCTTC 1 cut(s) 266
BstAUI TGTACA 1 cut(s) 1012
BstDEI CTNAG 7 cut(s) 32, 103, 215, 466, 712, 740, 771
BstF5I GGATG 3 cut(s) 200, 607, 1038
BstKTI GATC 2 cut(s) 111, 699
BstMAI GTCTC 2 cut(s) 70, 362
BstMBI GATC 2 cut(s) 108, 696
BstMWI GCNNNNNNNGC 3 cut(s) 158, 175, 537
BstNI CCWGG 3 cut(s) 384, 694, 960
BstSCI CCNGG 3 cut(s) 382, 692, 958
BstSFI CTRYAG 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 696
BstXI CCANNNNNNTGG 1 cut(s) 700
BstYI RGATCY 1 cut(s) 696
BsuI GTATCC 1 cut(s) 936
BsuRI GGCC 4 cut(s) 54, 483, 597, 686
BtsCI GGATG 3 cut(s) 200, 607, 1038
BtsIMutI CAGTG 2 cut(s) 111, 729
BveI ACCTGC 2 cut(s) 545, 838
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 1013
CviAII CATG 1 cut(s) 485
CviQI GTAC 1 cut(s) 1013
DdeI CTNAG 7 cut(s) 32, 103, 215, 466, 712, 740, 771
DpnI GATC 2 cut(s) 110, 698
DpnII GATC 2 cut(s) 108, 696
EaeI YGGCCR 2 cut(s) 52, 684
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 2 cut(s) 115, 207
Ecl136II GAGCTC 1 cut(s) 432
Eco24I GRGCYC 2 cut(s) 434, 465
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 955
EcoICRI GAGCTC 1 cut(s) 432
EcoRII CCWGG 3 cut(s) 382, 692, 958
EcoT38I GRGCYC 2 cut(s) 434, 465
FaeI CATG 1 cut(s) 488
FatI CATG 1 cut(s) 484
FauNDI CATATG 1 cut(s) 997
Fnu4HI GCNGC 2 cut(s) 167, 684
FokI GGATG 3 cut(s) 207, 594, 1025
FriOI GRGCYC 2 cut(s) 434, 465
Fsp4HI GCNGC 2 cut(s) 167, 684
FspBI CTAG 3 cut(s) 149, 662, 1034
GluI GCNGC 2 cut(s) 167, 684
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 4 cut(s) 54, 483, 597, 686
HapII CCGG 2 cut(s) 19, 236
HgaI GACGC 1 cut(s) 313
Hin1II CATG 1 cut(s) 488
HindIII AAGCTT 3 cut(s) 225, 651, 967
HinfI GANTC 4 cut(s) 488, 500, 769, 991
HpaII CCGG 2 cut(s) 19, 236
HphI GGTGA 1 cut(s) 817
Hpy166II GTNNAC 2 cut(s) 825, 889
Hpy188I TCNGA 5 cut(s) 293, 715, 796, 896, 974
Hpy188III TCNNGA 5 cut(s) 413, 497, 560, 929, 988
Hpy8I GTNNAC 2 cut(s) 825, 889
HpyAV CCTTC 2 cut(s) 139, 1018
HpyCH4III ACNGT 2 cut(s) 332, 733
HpyCH4V TGCA 4 cut(s) 60, 540, 729, 736
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 175, 537
HpyF3I CTNAG 7 cut(s) 32, 103, 215, 466, 712, 740, 771
Hsp92II CATG 1 cut(s) 488
Kzo9I GATC 2 cut(s) 108, 696
LmnI GCTCC 3 cut(s) 21, 238, 460
Lsp1109I GCAGC 1 cut(s) 153
LweI GCATC 1 cut(s) 307
MaeI CTAG 3 cut(s) 149, 662, 1034
MaeIII GTNAC 5 cut(s) 301, 377, 391, 643, 672
MalI GATC 2 cut(s) 110, 698
MboI GATC 2 cut(s) 108, 696
MboII GAAGA 8 cut(s) 67, 112, 216, 238, 241, 253, 617, 931
MflI RGATCY 1 cut(s) 696
MhlI GDGCHC 3 cut(s) 434, 465, 671
MluCI AATT 5 cut(s) 48, 586, 621, 799, 816
MlyI GAGTC 1 cut(s) 763
MmeI TCCRAC 4 cut(s) 316, 438, 859, 961
MnlI CCTC 6 cut(s) 79, 123, 418, 510, 709, 721
MseI TTAA 2 cut(s) 620, 1048
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 2 cut(s) 19, 236
MspR9I CCNGG 3 cut(s) 384, 694, 960
MvaI CCWGG 3 cut(s) 384, 694, 960
MwoI GCNNNNNNNGC 3 cut(s) 158, 175, 537
NdeI CATATG 1 cut(s) 997
NdeII GATC 2 cut(s) 108, 696
NlaIII CATG 1 cut(s) 488
NlaIV GGNNCC 2 cut(s) 234, 462
NmeAIII GCCGAG 1 cut(s) 137
NmuCI GTSAC 3 cut(s) 301, 377, 672
PaqCI CACCTGC 1 cut(s) 838
PfeI GAWTC 3 cut(s) 488, 500, 991
PflMI CCANNNNNTGG 1 cut(s) 424
PfoI TCCNGGA 1 cut(s) 692
PkrI GCNGC 2 cut(s) 168, 685
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 434
Psp6I CCWGG 3 cut(s) 382, 692, 958
PspGI CCWGG 3 cut(s) 382, 692, 958
PspN4I GGNNCC 2 cut(s) 234, 462
PspPI GGNCC 1 cut(s) 39
PsrI GAACNNNNNNTAC 2 cut(s) 917, 949
PsuI RGATCY 1 cut(s) 696
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 1 cut(s) 1014
RsaNI GTAC 1 cut(s) 1013
SacI GAGCTC 1 cut(s) 434
SaqAI TTAA 2 cut(s) 620, 1048
SatI GCNGC 2 cut(s) 167, 684
Sau3AI GATC 2 cut(s) 108, 696
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 3 cut(s) 384, 694, 960
SduI GDGCHC 3 cut(s) 434, 465, 671
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 361
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 441, 495
SmoI CTYRAG 2 cut(s) 441, 495
Sse9I AATT 5 cut(s) 48, 586, 621, 799, 816
SsiI CCGC 3 cut(s) 126, 192, 683
SspI AATATT 2 cut(s) 256, 979
SspMI CTAG 3 cut(s) 149, 662, 1034
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 3 cut(s) 382, 692, 958
TaaI ACNGT 2 cut(s) 332, 733
TaqII GACCGA 1 cut(s) 27
TasI AATT 5 cut(s) 48, 586, 621, 799, 816
TatI WGTACW 1 cut(s) 1012
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 3 cut(s) 488, 500, 991
Tru1I TTAA 2 cut(s) 620, 1048
Tru9I TTAA 2 cut(s) 620, 1048
TscAI CASTG 2 cut(s) 111, 736
TseFI GTSAC 3 cut(s) 301, 377, 672
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 3 cut(s) 301, 377, 672
TspDTI ATGAA 2 cut(s) 253, 501
TspRI CASTG 2 cut(s) 111, 736
Van91I CCANNNNNTGG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 799
XspI CTAG 3 cut(s) 149, 662, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.