Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008198

Physical Location & Seq

Genomic Coordinates Forward (+)

78566405 .. 78567371

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG561000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAAATTGCGGTGAACTCTAGAGTCGGATCTGAAACTCTTTTTTGGGTCTCTGAGAAGGTTAAATCTCAAGTGGCTCCCAACCGAGTAGATCAAATCTATCGCAGTTGGGAATCATCGGTTGTTTATGGTGCGTTGCTGAAAATTGAATTTAGATTCTCAGACCCAATTAAGGGGCTCCGAGCAGCAATCAAAATCAAGGGGGAAGTGAGCTGCTTCAGCTGTTGTGATGAAGATGATATGCATAAAGCAACTGACAATGGAGGTGCTTACATGATGAACCTACAAGTAATGCTCACCATCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

5.77

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06700 AT1G06700 AT1G06700 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740
rosa_chinensis	RchiOBHm_Chr5g0078841
rosa_rugosa	Rorug05G0461400
rosa_samantha	Rh5CG561000
rosa_wichuraiana	Rw5G047820 Rw5G047930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	202
AfiI	CCNNNNNNNGG	2 cut(s)	172, 173
AgsI	TTSAA	1 cut(s)	149
AluBI	AGCT	2 cut(s)	213, 222
AluI	AGCT	2 cut(s)	213, 222
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	185, 213
ApoI	RAATTY	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	25, 289
BanII	GRGCYC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	197, 200
BccI	CCATC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	305
BisI	GCNGC	2 cut(s)	186, 214
BlsI	GCNGC	2 cut(s)	187, 215
BmiI	GGNNCC	2 cut(s)	78, 179
BpuEI	CTTGAG	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 173
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	172, 173
BseMII	CTCAG	2 cut(s)	45, 174
BseXI	GCAGC	2 cut(s)	197, 200
BslI	CCNNNNNNNGG	2 cut(s)	172, 173
BsmAI	GTCTC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	29, 91
BspACI	CCGC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	46, 173
BspLI	GGNNCC	2 cut(s)	78, 179
BspPI	GGATC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	55
BssMI	GATC	2 cut(s)	29, 91
BstDEI	CTNAG	2 cut(s)	54, 160
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	2 cut(s)	32, 94
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	2 cut(s)	29, 91
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	197, 200
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	300
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	4 cut(s)	77, 178, 213, 222
CviKI_1	RGCY	4 cut(s)	77, 178, 213, 222
DdeI	CTNAG	2 cut(s)	54, 160
DpnI	GATC	2 cut(s)	31, 93
DpnII	GATC	2 cut(s)	29, 91
Eco24I	GRGCYC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	129, 242, 246, 275, 307
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	186, 214
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	186, 214
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	186, 214
Hin1II	CATG	1 cut(s)	277
HinfI	GANTC	3 cut(s)	24, 113, 156
HphI	GGTGA	2 cut(s)	25, 289
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	5 cut(s)	29, 34, 55, 163, 182
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	2 cut(s)	54, 160
Hsp92II	CATG	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	29, 91
LmnI	GCTCC	2 cut(s)	82, 183
Lsp1109I	GCAGC	2 cut(s)	197, 200
MaeI	CTAG	1 cut(s)	21
MalI	GATC	2 cut(s)	31, 93
MboI	GATC	2 cut(s)	29, 91
MboII	GAAGA	1 cut(s)	245
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	4 cut(s)	6, 144, 149, 168
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	1 cut(s)	257
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	2 cut(s)	63, 171
MspA1I	CMGCKG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeII	GATC	2 cut(s)	29, 91
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	2 cut(s)	78, 179
NsiI	ATGCAT	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	113, 156
PkrI	GCNGC	2 cut(s)	187, 215
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	78, 179
PsuI	RGATCY	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	63, 171
SatI	GCNGC	2 cut(s)	186, 214
Sau3AI	GATC	2 cut(s)	29, 91
SchI	GAGTC	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	5 cut(s)	63, 215, 224, 268, 285
SfcI	CTRYAG	1 cut(s)	305
SgeI	CNNG	7 cut(s)	33, 83, 98, 194, 211, 286, 299
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	4 cut(s)	6, 144, 149, 168
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	21
TasI	AATT	4 cut(s)	6, 144, 149, 168
TfiI	GAWTC	2 cut(s)	113, 156
Tru1I	TTAA	2 cut(s)	63, 171
Tru9I	TTAA	2 cut(s)	63, 171
TseI	GCWGC	2 cut(s)	185, 213
TspDTI	ATGAA	2 cut(s)	246, 293
XapI	RAATTY	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	20
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.