Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008198

Physical Location & Seq

Genomic Coordinates Forward (+)

82856553 .. 82858504

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G047820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCAAGCACGAGCGATGCCCATTTCCTCCTAGTTGCTTCGCCGCGAAAAGGGCAGATGGAAATTGCGGTGAACTCTAGAGTCGGATCTGAAACTCTTTTTTGGGTCTCTGAGAAGGTTAAATCTCAAGTGGCTCCCAACCGAGTAGATCAAATCTATCGCAGTTGGGAATCATCGGTTGTTTATGGTGCGTTGCTGAAAATTGTATTTAGATTCTCAGACCCAAATAAGGGGCTCCGAGCAGCAATCAAAATCAAGGGGGAAGTGAGCTGCTTCAGCTGTTGTGATGAAGATGATATGCATAAAGCAACTGACAATGGAGGTGCTTACATGATGAACCTACAATCAAGAAGTAGCCAAATATGGGGATTACAGATTGACCTGAATGGAATTTCAATGTCTTTCACCTGGAATCCCCCTATCGAGCAAGGAACGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.22

Weight (kDa)

6.71

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06700 AT1G06700 AT1G06700 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740 AT2G30740
rosa_chinensis	RchiOBHm_Chr5g0078841
rosa_rugosa	Rorug05G0461400
rosa_samantha	Rh5CG561000
rosa_wichuraiana	Rw5G047820 Rw5G047930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	46
AciI	CCGC	2 cut(s)	44, 68
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	259
AfiI	CCNNNNNNNGG	4 cut(s)	50, 229, 230, 364
AgsI	TTSAA	1 cut(s)	396
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	2 cut(s)	270, 279
AluI	AGCT	2 cut(s)	270, 279
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	242, 270
ApoI	RAATTY	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	82, 397
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	254, 257
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	3 cut(s)	32, 78, 439
BisI	GCNGC	3 cut(s)	44, 243, 271
BlsI	GCNGC	3 cut(s)	45, 244, 272
Bme1390I	CCNGG	1 cut(s)	409
BmiI	GGNNCC	2 cut(s)	135, 236
BmrFI	CCNGG	1 cut(s)	409
BmsI	GCATC	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 229, 230, 364
BseBI	CCWGG	1 cut(s)	409
BseLI	CCNNNNNNNGG	4 cut(s)	50, 229, 230, 364
BseMII	CTCAG	2 cut(s)	102, 231
BseXI	GCAGC	2 cut(s)	254, 257
Bsh1236I	CGCG	1 cut(s)	46
BslI	CCNNNNNNNGG	4 cut(s)	50, 229, 230, 364
BsmAI	GTCTC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	86, 148
BspACI	CCGC	2 cut(s)	44, 68
BspCNI	CTCAG	2 cut(s)	103, 230
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	135, 236
BspPI	GGATC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	112
BssMI	GATC	2 cut(s)	86, 148
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	111, 217
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	2 cut(s)	89, 151
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	2 cut(s)	86, 148
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 276
BstNI	CCWGG	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	254, 257
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BtgZI	GCGATG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	7
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	5 cut(s)	134, 235, 270, 279, 357
CviKI_1	RGCY	5 cut(s)	134, 235, 270, 279, 357
DdeI	CTNAG	2 cut(s)	111, 217
DpnI	GATC	2 cut(s)	88, 150
DpnII	GATC	2 cut(s)	86, 148
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	407
EcoT22I	ATGCAT	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	1 cut(s)	334
FaiI	YATR	5 cut(s)	186, 299, 303, 332, 364
FatI	CATG	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	44, 243, 271
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	44, 243, 271
FspBI	CTAG	3 cut(s)	32, 78, 439
GluI	GCNGC	3 cut(s)	44, 243, 271
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	4 cut(s)	81, 170, 213, 412
HphI	GGTGA	2 cut(s)	82, 397
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	5 cut(s)	86, 91, 112, 220, 239
Hpy188III	TCNNGA	2 cut(s)	78, 348
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 276
HpyF3I	CTNAG	2 cut(s)	111, 217
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	86, 148
LmnI	GCTCC	2 cut(s)	139, 240
LpnPI	CCDG	3 cut(s)	394, 395, 421
Lsp1109I	GCAGC	2 cut(s)	254, 257
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	3 cut(s)	32, 78, 439
MaeII	ACGT	1 cut(s)	434
MalI	GATC	2 cut(s)	88, 150
MboI	GATC	2 cut(s)	86, 148
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	63, 201, 390
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	2 cut(s)	38, 314
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	409
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	52, 276
NdeII	GATC	2 cut(s)	86, 148
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	2 cut(s)	135, 236
NsiI	ATGCAT	1 cut(s)	303
PfeI	GAWTC	3 cut(s)	170, 213, 412
PkrI	GCNGC	3 cut(s)	45, 244, 272
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	135, 236
PsuI	RGATCY	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	3 cut(s)	44, 243, 271
Sau3AI	GATC	2 cut(s)	86, 148
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	8 cut(s)	120, 272, 281, 325, 342, 384, 410, 437
SfaNI	GCATC	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	3 cut(s)	63, 201, 390
SsiI	CCGC	2 cut(s)	44, 68
SspMI	CTAG	3 cut(s)	32, 78, 439
StyD4I	CCNGG	1 cut(s)	407
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	1 cut(s)	423
TasI	AATT	3 cut(s)	63, 201, 390
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	170, 213, 412
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	2 cut(s)	242, 270
TspDTI	ATGAA	2 cut(s)	303, 350
XapI	RAATTY	1 cut(s)	390
XbaI	TCTAGA	1 cut(s)	77
XspI	CTAG	3 cut(s)	32, 78, 439
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.