RchiOBHm_Chr5g0078841

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
84668603 .. 84670399
1797 bp
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UTR
Exon/CDS
Intron
PRQ35333

Sequence Viewer

Length: 177 bp
ATGCATAAAGCAACTGACAATGGAGGTGCTTACATGATGAACCTGCAATCAAGAAGTTGCCAAATATGGGGATTACGGATTGACCCGAATAGAATTTCAATTTCTTTCACTTGGAATCCCTCTATCGAGCAAGGTCATAAACATATCTGCTGCGTATTTGAACGATACGGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.7

Weight (kDa)

8.61

Isoelectric Point (pI)

79.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 2 cut(s) 99, 161
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 170
AvaII GGWCC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 51
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 137
BveI ACCTGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 170
CviAII CATG 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 37
FaiI YATR 5 cut(s) 6, 35, 67, 138, 144
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 37
HinfI GANTC 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 4, 46
Hsp92II CATG 1 cut(s) 37
LpnPI CCDG 1 cut(s) 56
Lsp1109I GCAGC 1 cut(s) 137
MluCI AATT 2 cut(s) 93, 99
MnlI CCTC 2 cut(s) 17, 130
Mph1103I ATGCAT 1 cut(s) 6
NlaIII CATG 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 170
SatI GCNGC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 170
SetI ASST 4 cut(s) 28, 45, 136, 175
SgeI CNNG 7 cut(s) 46, 55, 63, 97, 123, 139, 143
SinI GGWCC 1 cut(s) 170
Sse9I AATT 2 cut(s) 93, 99
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 93, 99
TfiI GAWTC 1 cut(s) 115
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.