Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010560.1

Orthogroup ID

OG0019334

Physical Location & Seq

Genomic Coordinates Reverse (-)

28287 .. 30719

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010560.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgtgcacaggaacgggaaaaagatgcagtgggtgtgcgttggcttgtttgcgcagcagggatgcttcggtggcagcaggctggaacgcagggctgcagggagggggcagcagggcttctgtcgatgttcctacaatcctaccttcttggcacatctcggagcctattgtccacttaagttcggcctgtccagacagctcgggattgaagtcaaacgaacttccaacctcatttcccaaccaaaaccaaacccaaaccacagaaccaacaaacctagttgaggatgttgggattgcaaagcaaaaacaacaaaggaagaagctgagggttccgggaacgctgttgtctgaggtgttggagcagatgaaagtacccaagacggatgatcatggggtgcatgtgatagtgcctgcgagactggtgggggttgatggggtgttgttcgggtttcctacccgatatgggtcaatggctgctcagtttagggcgtttttcgactccatgggggagttgtggagggagcagaagcttgctgggttgcctgctggttctttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

185

Amino Acids

19.73

Weight (kDa)

8.67

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019334)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323051 RchiOBHm_Chr2g0156421 RchiOBHm_Chr3g0481411 RchiOBHm_Chr3g0486151 RchiOBHm_Chr4g0413911
rosa_multiflora	Rmu_sc0002146.1_g000003 Rmu_sc0010560.1_g000006
rosa_rugosa	Rorug05G0461400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	53
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	280, 462
AflII	CTTAAG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	3 cut(s)	198, 322, 529
AluI	AGCT	3 cut(s)	198, 322, 529
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	409
Alw44I	GTGCAC	1 cut(s)	4
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	5 cut(s)	54, 74, 94, 108, 473
AspLEI	GCGC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	5 cut(s)	66, 81, 86, 120, 460
BccI	CCATC	1 cut(s)	425
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	95
BfrI	CTTAAG	1 cut(s)	175
BisI	GCNGC	5 cut(s)	55, 75, 95, 109, 474
BlsI	GCNGC	5 cut(s)	56, 76, 96, 110, 475
Bme1390I	CCNGG	1 cut(s)	333
BmeT110I	CYCGRG	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	162, 330
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	14, 52
Bpu10I	CCTNAGC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 462
Bse1I	ACTGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	3 cut(s)	67, 289, 388
BseLI	CCNNNNNNNGG	2 cut(s)	280, 462
BseMII	CTCAG	3 cut(s)	314, 339, 491
BseNI	ACTGG	1 cut(s)	423
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	5 cut(s)	66, 81, 86, 120, 460
BseYI	CCCAGC	1 cut(s)	533
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	280, 462
BsmAI	GTCTC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	385
Bsp19I	CCATGG	1 cut(s)	501
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	3 cut(s)	315, 340, 490
BspLI	GGNNCC	2 cut(s)	162, 330
BspMAI	CTGCAG	1 cut(s)	99
BspTI	CTTAAG	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	501
BstAFI	CTTAAG	1 cut(s)	175
BstC8I	GCNNGC	4 cut(s)	79, 411, 531, 543
BstDEI	CTNAG	3 cut(s)	323, 348, 477
BstDSI	CCRYGG	1 cut(s)	501
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstF5I	GGATG	3 cut(s)	67, 289, 388
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	5 cut(s)	66, 81, 86, 120, 460
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	3 cut(s)	67, 289, 388
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	4 cut(s)	79, 411, 531, 543
CfoI	GCGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	3 cut(s)	389, 398, 502
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	323, 348, 477
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	3 cut(s)	392, 401, 505
FaiI	YATR	4 cut(s)	390, 399, 462, 503
FatI	CATG	3 cut(s)	388, 397, 501
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	5 cut(s)	55, 75, 95, 109, 474
FokI	GGATG	3 cut(s)	74, 296, 395
Fsp4HI	GCNGC	5 cut(s)	55, 75, 95, 109, 474
FspBI	CTAG	1 cut(s)	275
FspI	TGCGCA	1 cut(s)	53
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	5 cut(s)	55, 75, 95, 109, 474
GsaI	CCCAGC	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	332
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	392, 401, 505
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	1 cut(s)	497
HpaII	CCGG	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	6, 172
Hpy188I	TCNGA	2 cut(s)	160, 349
Hpy188III	TCNNGA	2 cut(s)	191, 201
Hpy8I	GTNNAC	2 cut(s)	6, 172
HpyAV	CCTTC	1 cut(s)	153
HpyCH4V	TGCA	5 cut(s)	6, 27, 97, 296, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	3 cut(s)	323, 348, 477
Hsp92II	CATG	3 cut(s)	392, 401, 505
HspAI	GCGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	385
LmnI	GCTCC	3 cut(s)	160, 358, 520
Lsp1109I	GCAGC	5 cut(s)	66, 81, 86, 120, 460
LweI	GCATC	2 cut(s)	14, 52
MaeI	CTAG	1 cut(s)	275
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	248, 336
MnlI	CCTC	6 cut(s)	95, 238, 274, 318, 343, 510
MseI	TTAA	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	175
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	333
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	3 cut(s)	392, 401, 505
NlaIV	GGNNCC	2 cut(s)	162, 330
NsbI	TGCGCA	1 cut(s)	53
NspI	RCATGY	1 cut(s)	401
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	5 cut(s)	56, 76, 96, 110, 475
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	162, 330
PstI	CTGCAG	1 cut(s)	99
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	5 cut(s)	55, 75, 95, 109, 474
Sau3AI	GATC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	145, 200, 230, 276, 324, 354, 531
SfaNI	GCATC	2 cut(s)	14, 52
SfcI	CTRYAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	501
TaqI	TCGA	2 cut(s)	123, 495
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	5 cut(s)	54, 74, 94, 108, 473
TspDTI	ATGAA	1 cut(s)	380
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	278
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.