RchiOBHm_Chr1g0326161

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017410
Physical Location & Seq
Reverse (-)
14375764 .. 14376495
732 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55580

Sequence Viewer

Length: 732 bp
ATGCCAAAGACTGCAAACCCGGGGAGGAGACATGCCACCTTGCTCAAGAAGGCCAATGAGTTATCTATTCTATGTGATGCAGAGGTCGCCATCATCGCTTTTTCACCTGATGGAGAACTCCATGAATACTCGAGCACAAGCATGGAACACACTCTTGAAAGATACAAGAACAGGACTGGCCTCGTCCTCCCAAGCAGAGTCGAGTCTCCGGCGCCAGAAGAGCACCGCCATGAACCTGCAAAGCAGGAACTGCAGGAAAGACATAAAGCGCTACGCTTGGAGAAATTGCAGAGAATGGGAAAGGAGTTGGATGGCCTGAGTTCGGACGCGCTGGCTACGCTTTTGGAACAACAAACTAAAGGGTTATTAGCTGTTCACAGCAAGAAAGTGGAACTGCTTGAGGAGAAGTTGCAGAGATCTAGGACGAGAGAAGAGCAGGCTATGCATGAGAATGGGCTGCTTGAGGAGAAGTTGCTGAGATCTAGGTCAAGAGAAGAGCAGACTATGCACGAGAATAAGAGTCTGCGCAGAAGGATCGGGGGGTTCATGATGAGGCAAAACTACAAGCGACATATCCTTTCATGCCATCCAGCCAATTATTTCGATAGAAATTTTGGAAATAGAATGGGTTTCTGCACAAGCTCAAGAGCTGCTGTTTCTGTTTCCAACTATCCATCGGAGGGAACCGATGACCATTTAGACATGACCACCTTGCGGTTGTGGCCGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

243

Amino Acids

27.97

Weight (kDa)

8.94

Isoelectric Point (pI)

78.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 9 - 43 8.3e-15 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 82 - 158 7.5e-06 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017410)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0326161
rosa_laevigata RLG00000030089
rosa_multiflora Rmu_co8253881.1_g000001 Rmu_sc0000028.1_g000010
rosa_roxburghii Rroxscaffold_4G00324030
rosa_rugosa Rorug01G0057400
rosa_samantha Rh1AG074300 Rh1BG059800 Rh1DG078300 Rh1DG079500
rosa_wichuraiana Rw0G003150 Rw0G020750 Rw1G005960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 527
Acc36I ACCTGC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 1 cut(s) 329
AciI CCGC 2 cut(s) 226, 715
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 722
AcsI RAATTY 1 cut(s) 610
AcyI GRCGYC 1 cut(s) 212
AfeI AGCGCT 1 cut(s) 270
AfiI CCNNNNNNNGG 3 cut(s) 322, 680, 714
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 3 cut(s) 371, 642, 650
AluI AGCT 3 cut(s) 371, 642, 650
Alw21I GWGCWC 2 cut(s) 137, 225
Alw26I GTCTC 2 cut(s) 22, 210
AlwI GGATC 1 cut(s) 542
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 2 cut(s) 19, 130
Aor51HI AGCGCT 1 cut(s) 270
AoxI GGCC 4 cut(s) 51, 178, 313, 722
ApeKI GCWGC 2 cut(s) 457, 650
ApoI RAATTY 1 cut(s) 610
AspLEI GCGC 4 cut(s) 214, 271, 331, 528
AsuC2I CCSGG 2 cut(s) 20, 21
AsuHPI GGTGA 1 cut(s) 96
AvaI CYCGRG 2 cut(s) 19, 130
BanI GGYRCC 1 cut(s) 211
BauI CACGAG 1 cut(s) 509
Bbv12I GWGCWC 2 cut(s) 137, 225
BbvI GCAGC 2 cut(s) 444, 637
BccI CCATC 5 cut(s) 98, 104, 305, 594, 682
BceAI ACGGC 1 cut(s) 709
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BcnI CCSGG 2 cut(s) 20, 21
BcoDI GTCTC 2 cut(s) 22, 210
BfaI CTAG 2 cut(s) 420, 483
BfmI CTRYAG 1 cut(s) 251
BfoI RGCGCY 2 cut(s) 215, 272
BfuAI ACCTGC 1 cut(s) 244
BglII AGATCT 2 cut(s) 416, 479
BisI GCNGC 2 cut(s) 458, 651
BlsI GCNGC 2 cut(s) 459, 652
Bme1390I CCNGG 2 cut(s) 20, 21
BmeT110I CYCGRG 2 cut(s) 19, 130
BmiI GGNNCC 2 cut(s) 213, 685
BmrFI CCNGG 2 cut(s) 20, 21
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 4 cut(s) 29, 419, 482, 628
BpuMI CCSGG 2 cut(s) 20, 21
BsaHI GRCGYC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 19, 20
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 680, 714
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 19, 20
BseGI GGATG 2 cut(s) 316, 586
BseLI CCNNNNNNNGG 3 cut(s) 322, 680, 714
BseMII CTCAG 2 cut(s) 308, 467
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 3 cut(s) 40, 416, 479
BseXI GCAGC 2 cut(s) 444, 637
BsgI GTGCAG 1 cut(s) 619
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 4 cut(s) 53, 180, 315, 724
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 137, 225
BsiHKCI CYCGRG 2 cut(s) 19, 130
BsiSI CCGG 2 cut(s) 20, 209
BslI CCNNNNNNNGG 3 cut(s) 322, 680, 714
BsmAI GTCTC 2 cut(s) 22, 210
BsnI GGCC 4 cut(s) 53, 180, 315, 724
BsoBI CYCGRG 2 cut(s) 19, 130
Bsp1286I GDGCHC 2 cut(s) 137, 225
Bsp143I GATC 3 cut(s) 416, 479, 534
BspACI CCGC 2 cut(s) 226, 715
BspANI GGCC 4 cut(s) 53, 180, 315, 724
BspCNI CTCAG 2 cut(s) 309, 468
BspFNI CGCG 1 cut(s) 329
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 213, 685
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 542
BspQI GCTCTTC 3 cut(s) 213, 426, 489
BspT107I GGYRCC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 19, 20
BssMI GATC 3 cut(s) 416, 479, 534
BssNI GRCGYC 1 cut(s) 212
BssSI CACGAG 1 cut(s) 509
Bst2BI CACGAG 1 cut(s) 509
Bst6I CTCTTC 3 cut(s) 213, 426, 489
BstACI GRCGYC 1 cut(s) 212
BstAPI GCANNNNNTGC 3 cut(s) 250, 442, 505
BstC8I GCNNGC 2 cut(s) 333, 438
BstDEI CTNAG 2 cut(s) 317, 476
BstF5I GGATG 2 cut(s) 316, 586
BstFNI CGCG 1 cut(s) 329
BstH2I RGCGCY 2 cut(s) 215, 272
BstHHI GCGC 4 cut(s) 214, 271, 331, 528
BstKTI GATC 3 cut(s) 419, 482, 537
BstMAI GTCTC 2 cut(s) 22, 210
BstMBI GATC 3 cut(s) 416, 479, 534
BstMWI GCNNNNNNNGC 8 cut(s) 86, 95, 220, 250, 337, 442, 505, 721
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 18, 19
BstSFI CTRYAG 1 cut(s) 251
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 444, 637
BstX2I RGATCY 2 cut(s) 416, 479
BstYI RGATCY 2 cut(s) 416, 479
BsuRI GGCC 4 cut(s) 53, 180, 315, 724
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 2 cut(s) 316, 586
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 2 cut(s) 333, 438
CaiI CAGNNNCTG 1 cut(s) 250
CciI TCATGA 1 cut(s) 546
CfoI GCGC 4 cut(s) 214, 271, 331, 528
Cfr9I CCCGGG 1 cut(s) 19
CseI GACGC 1 cut(s) 335
CviAII CATG 8 cut(s) 32, 122, 142, 230, 446, 547, 582, 703
DdeI CTNAG 2 cut(s) 317, 476
DinI GGCGCC 1 cut(s) 213
DpnI GATC 3 cut(s) 418, 481, 536
DpnII GATC 3 cut(s) 416, 479, 534
EaeI YGGCCR 1 cut(s) 722
Eam1104I CTCTTC 3 cut(s) 213, 426, 489
EarI CTCTTC 3 cut(s) 213, 426, 489
Eco47III AGCGCT 1 cut(s) 270
Eco88I CYCGRG 2 cut(s) 19, 130
EcoT22I ATGCAT 1 cut(s) 447
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
FatI CATG 8 cut(s) 31, 121, 141, 229, 445, 546, 581, 702
Fnu4HI GCNGC 2 cut(s) 458, 651
FokI GGATG 2 cut(s) 323, 573
Fsp4HI GCNGC 2 cut(s) 458, 651
FspBI CTAG 2 cut(s) 420, 483
FspI TGCGCA 1 cut(s) 527
GlaI GCGC 4 cut(s) 213, 270, 330, 527
GluI GCNGC 2 cut(s) 458, 651
HaeII RGCGCY 2 cut(s) 215, 272
HaeIII GGCC 4 cut(s) 53, 180, 315, 724
HapII CCGG 2 cut(s) 20, 209
HgaI GACGC 1 cut(s) 335
HhaI GCGC 4 cut(s) 214, 271, 331, 528
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
Hin6I GCGC 4 cut(s) 212, 269, 329, 526
HinP1I GCGC 4 cut(s) 212, 269, 329, 526
HinfI GANTC 3 cut(s) 198, 203, 520
HpaII CCGG 2 cut(s) 20, 209
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 2 cut(s) 325, 679
Hpy188III TCNNGA 5 cut(s) 46, 155, 489, 547, 645
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 2 cut(s) 43, 525
HpyCH4V TGCA 9 cut(s) 14, 80, 239, 253, 289, 412, 445, 508, 636
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 95, 220, 250, 337, 442, 505, 721
HpyF3I CTNAG 2 cut(s) 317, 476
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
HspAI GCGC 4 cut(s) 212, 269, 329, 526
KasI GGCGCC 1 cut(s) 211
Kzo9I GATC 3 cut(s) 416, 479, 534
LguI GCTCTTC 3 cut(s) 213, 426, 489
Lsp1109I GCAGC 2 cut(s) 444, 637
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 420, 483
MalI GATC 3 cut(s) 418, 481, 536
MboI GATC 3 cut(s) 416, 479, 534
MboII GAAGA 3 cut(s) 230, 443, 506
MflI RGATCY 2 cut(s) 416, 479
MhlI GDGCHC 2 cut(s) 137, 225
MluCI AATT 3 cut(s) 284, 595, 610
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 3 cut(s) 207, 212, 529
MmeI TCCRAC 2 cut(s) 288, 690
MnlI CCTC 8 cut(s) 18, 76, 191, 197, 394, 457, 546, 673
Mph1103I ATGCAT 1 cut(s) 447
MslI CAYNNNNRTG 3 cut(s) 140, 228, 450
MspI CCGG 2 cut(s) 20, 209
MspR9I CCNGG 2 cut(s) 20, 21
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 8 cut(s) 86, 95, 220, 250, 337, 442, 505, 721
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 20, 21
NdeII GATC 3 cut(s) 416, 479, 534
NlaIII CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
NlaIV GGNNCC 2 cut(s) 213, 685
NsbI TGCGCA 1 cut(s) 527
NsiI ATGCAT 1 cut(s) 447
NspI RCATGY 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 130
PagI TCATGA 1 cut(s) 546
PciSI GCTCTTC 3 cut(s) 213, 426, 489
PkrI GCNGC 2 cut(s) 459, 652
PleI GAGTC 3 cut(s) 206, 211, 528
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 3 cut(s) 206, 211, 528
PspN4I GGNNCC 2 cut(s) 213, 685
PspXI VCTCGAGB 1 cut(s) 130
PstI CTGCAG 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 416, 479
RseI CAYNNNNRTG 3 cut(s) 140, 228, 450
SapI GCTCTTC 3 cut(s) 213, 426, 489
SatI GCNGC 2 cut(s) 458, 651
Sau3AI GATC 3 cut(s) 416, 479, 534
SchI GAGTC 3 cut(s) 207, 212, 529
ScrFI CCNGG 2 cut(s) 20, 21
SduI GDGCHC 2 cut(s) 137, 225
SetI ASST 9 cut(s) 41, 87, 109, 238, 373, 488, 644, 652, 713
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 251
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 130
SmaI CCCGGG 1 cut(s) 21
SmiMI CAYNNNNRTG 3 cut(s) 140, 228, 450
SmlI CTYRAG 5 cut(s) 44, 130, 398, 461, 643
SmoI CTYRAG 5 cut(s) 44, 130, 398, 461, 643
Sse9I AATT 3 cut(s) 284, 595, 610
SsiI CCGC 2 cut(s) 226, 715
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 2 cut(s) 420, 483
StyD4I CCNGG 2 cut(s) 18, 19
TaqI TCGA 3 cut(s) 131, 201, 603
TasI AATT 3 cut(s) 284, 595, 610
TseI GCWGC 2 cut(s) 457, 650
TspDTI ATGAA 4 cut(s) 138, 246, 535, 570
TspMI CCCGGG 1 cut(s) 19
XapI RAATTY 1 cut(s) 610
XceI RCATGY 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 130
XmaI CCCGGG 1 cut(s) 19
XspI CTAG 2 cut(s) 420, 483
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.