Rmu_co8253881.1_g000001

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8253881.1
OG0017410
Physical Location & Seq
Reverse (-)
2 .. 400
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8253881.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
atgccaaagactgcaaacccggggaggagacatgccaccttgctcaagaaggccaatgagttatctattctatgtgatgcagaggtcgccatcatcgctttttcacctgatggagaactccatgaatactcgagcacaagcatggaacacactcttgaaagatacaagtacaggactggcctcgtcctcccaagcagagtcgagtctccggcgccagaagagcaccgccatgaacctgcaaagcaggaactgcaggaaagacataaagcgctacgcttggagaaattgcagagaatgggaaaggagttggatggcctgagttcggacgcgctggctacgcttttggaacaacaaactaaagggttattagctgttcacagcaagaaagtggaactgctt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

133

Amino Acids

14.99

Weight (kDa)

7.07

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017410)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0326161
rosa_laevigata RLG00000030089
rosa_multiflora Rmu_co8253881.1_g000001 Rmu_sc0000028.1_g000010
rosa_roxburghii Rroxscaffold_4G00324030
rosa_rugosa Rorug01G0057400
rosa_samantha Rh1AG074300 Rh1BG059800 Rh1DG078300 Rh1DG079500
rosa_wichuraiana Rw0G003150 Rw0G020750 Rw1G005960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 1 cut(s) 329
AciI CCGC 1 cut(s) 226
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw21I GWGCWC 2 cut(s) 137, 225
Alw26I GTCTC 2 cut(s) 22, 210
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 2 cut(s) 19, 130
Aor51HI AGCGCT 1 cut(s) 270
AoxI GGCC 3 cut(s) 51, 178, 313
AspLEI GCGC 3 cut(s) 214, 271, 331
AsuC2I CCSGG 2 cut(s) 20, 21
AsuHPI GGTGA 1 cut(s) 96
AvaI CYCGRG 2 cut(s) 19, 130
BanI GGYRCC 1 cut(s) 211
Bbv12I GWGCWC 2 cut(s) 137, 225
BccI CCATC 3 cut(s) 98, 104, 305
BcnI CCSGG 2 cut(s) 20, 21
BcoDI GTCTC 2 cut(s) 22, 210
BfmI CTRYAG 1 cut(s) 251
BfoI RGCGCY 2 cut(s) 215, 272
BfuAI ACCTGC 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 20, 21
BmeT110I CYCGRG 2 cut(s) 19, 130
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 2 cut(s) 20, 21
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 20, 21
BsaHI GRCGYC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 19, 20
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 19, 20
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 3 cut(s) 53, 180, 315
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 137, 225
BsiHKCI CYCGRG 2 cut(s) 19, 130
BsiSI CCGG 2 cut(s) 20, 209
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 22, 210
BsnI GGCC 3 cut(s) 53, 180, 315
BsoBI CYCGRG 2 cut(s) 19, 130
Bsp1286I GDGCHC 2 cut(s) 137, 225
BspACI CCGC 1 cut(s) 226
BspANI GGCC 3 cut(s) 53, 180, 315
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 19, 20
BssNI GRCGYC 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 329
BstH2I RGCGCY 2 cut(s) 215, 272
BstHHI GCGC 3 cut(s) 214, 271, 331
BstMAI GTCTC 2 cut(s) 22, 210
BstMWI GCNNNNNNNGC 5 cut(s) 86, 95, 220, 250, 337
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 18, 19
BstSFI CTRYAG 1 cut(s) 251
BstUI CGCG 1 cut(s) 329
BsuRI GGCC 3 cut(s) 53, 180, 315
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 316
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 3 cut(s) 214, 271, 331
Cfr9I CCCGGG 1 cut(s) 19
CseI GACGC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 169
CviAII CATG 4 cut(s) 32, 122, 142, 230
CviJI RGCY 5 cut(s) 53, 180, 315, 335, 371
CviKI_1 RGCY 5 cut(s) 53, 180, 315, 335, 371
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 317
DinI GGCGCC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco47III AGCGCT 1 cut(s) 270
Eco88I CYCGRG 2 cut(s) 19, 130
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 4 cut(s) 35, 125, 145, 233
FaiI YATR 6 cut(s) 33, 73, 123, 143, 231, 264
FatI CATG 4 cut(s) 31, 121, 141, 229
FokI GGATG 1 cut(s) 323
GlaI GCGC 3 cut(s) 213, 270, 330
HaeII RGCGCY 2 cut(s) 215, 272
HaeIII GGCC 3 cut(s) 53, 180, 315
HapII CCGG 2 cut(s) 20, 209
HgaI GACGC 1 cut(s) 335
HhaI GCGC 3 cut(s) 214, 271, 331
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 4 cut(s) 35, 125, 145, 233
Hin6I GCGC 3 cut(s) 212, 269, 329
HinP1I GCGC 3 cut(s) 212, 269, 329
HinfI GANTC 2 cut(s) 198, 203
HpaII CCGG 2 cut(s) 20, 209
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 46, 155
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 5 cut(s) 14, 80, 239, 253, 289
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 95, 220, 250, 337
HpyF3I CTNAG 1 cut(s) 317
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 4 cut(s) 35, 125, 145, 233
HspAI GCGC 3 cut(s) 212, 269, 329
KasI GGCGCC 1 cut(s) 211
LguI GCTCTTC 1 cut(s) 213
LweI GCATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 230
MhlI GDGCHC 2 cut(s) 137, 225
MluCI AATT 1 cut(s) 284
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 2 cut(s) 207, 212
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 4 cut(s) 18, 76, 191, 197
MslI CAYNNNNRTG 2 cut(s) 140, 228
MspI CCGG 2 cut(s) 20, 209
MspR9I CCNGG 2 cut(s) 20, 21
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 5 cut(s) 86, 95, 220, 250, 337
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 20, 21
NlaIII CATG 4 cut(s) 35, 125, 145, 233
NlaIV GGNNCC 1 cut(s) 213
NspI RCATGY 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 213
PleI GAGTC 2 cut(s) 206, 211
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 2 cut(s) 206, 211
PspN4I GGNNCC 1 cut(s) 213
PspXI VCTCGAGB 1 cut(s) 130
PstI CTGCAG 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 250
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 2 cut(s) 140, 228
SapI GCTCTTC 1 cut(s) 213
SchI GAGTC 2 cut(s) 207, 212
ScrFI CCNGG 2 cut(s) 20, 21
SduI GDGCHC 2 cut(s) 137, 225
SetI ASST 5 cut(s) 41, 87, 109, 238, 373
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 251
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 130
SmaI CCCGGG 1 cut(s) 21
SmiMI CAYNNNNRTG 2 cut(s) 140, 228
SmlI CTYRAG 2 cut(s) 44, 130
SmoI CTYRAG 2 cut(s) 44, 130
Sse9I AATT 1 cut(s) 284
SsiI CCGC 1 cut(s) 226
SspDI GGCGCC 1 cut(s) 211
StyD4I CCNGG 2 cut(s) 18, 19
TaqI TCGA 2 cut(s) 131, 201
TasI AATT 1 cut(s) 284
TatI WGTACW 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 138, 246
TspMI CCCGGG 1 cut(s) 19
XceI RCATGY 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 130
XmaI CCCGGG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.