Rorug01G0057400

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017410
Physical Location & Seq
Reverse (-)
9436085 .. 9438365
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0057400.1

Sequence Viewer

Length: 585 bp
ATGGAGTCGATAAAAGTGGCGGCGCTTTGTGGGTCCGTTCGTCAAGCCTCCTATAACCGAGGCCTCATTCGTTCTGCGATTGAGATAACCAAGGGGTCAATCGCCGGCGTAGAAATCGAGGACGTCGACATCACGGCGCTGCCGATGCTGAACACGGATCTGGAAGGCGGAGGGAGATTTCCGCCGGTGGTTGAGGCGTTTCGTCAGAAGATTTTAGAAGCTGATAGCATTCTCTTTGCTTCTCCCGAGTACAATTACTCTGTCTCTGCACCTCTGAAAAATGCTATTGACTGGGCATCTAGACCCCCCAATGTGTGGGCTGACAAAGCTGCTGCGATTATAAGTGCTTCAGGAGGTTCCGGTGGTTCAAGATCTCAATACCATCTTCGCCAAATCGGAGTTTTTCTCGATCTTCATTTCATCAACAAGCCTGAGCTTTTCATAGATGCATTCCATCCTCCGGGAAAATTTGACAAAAATGGCGACTTGATTGATGCAAAGACCAAGGAGAGTCTAAAACAAGTTCTACTATCATTGCAGACTTTTACTCTGAGACTCCAAGGAAGATCAAAGTTAAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

194

Amino Acids

21.16

Weight (kDa)

8.64

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_red PF03358 4 - 151 5.4e-40 NADPH-dependent FMN reductase
Flavodoxin_2 PF02525 6 - 122 1.3e-09 Flavodoxin-like fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017410)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0326161
rosa_laevigata RLG00000030089
rosa_multiflora Rmu_co8253881.1_g000001 Rmu_sc0000028.1_g000010
rosa_roxburghii Rroxscaffold_4G00324030
rosa_rugosa Rorug01G0057400
rosa_samantha Rh1AG074300 Rh1BG059800 Rh1DG078300 Rh1DG079500
rosa_wichuraiana Rw0G003150 Rw0G020750 Rw1G005960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
AatII GACGTC 1 cut(s) 126
AccB7I CCANNNNNTGG 1 cut(s) 315
AccI GTMKAC 1 cut(s) 126
AciI CCGC 3 cut(s) 20, 168, 182
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 315, 460
AgsI TTSAA 1 cut(s) 369
AluBI AGCT 3 cut(s) 221, 329, 436
AluI AGCT 3 cut(s) 221, 329, 436
Alw26I GTCTC 2 cut(s) 268, 547
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 3 cut(s) 139, 329, 332
ApoI RAATTY 1 cut(s) 467
AspLEI GCGC 2 cut(s) 25, 139
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 1 cut(s) 462
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 33
BbvI GCAGC 3 cut(s) 126, 316, 319
BccI CCATC 2 cut(s) 390, 462
BceAI ACGGC 1 cut(s) 150
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 2 cut(s) 268, 547
BfaI CTAG 1 cut(s) 300
BfoI RGCGCY 2 cut(s) 26, 140
BglII AGATCT 1 cut(s) 371
BisI GCNGC 4 cut(s) 21, 140, 330, 333
BlsI GCNGC 4 cut(s) 22, 141, 331, 334
Bme1390I CCNGG 1 cut(s) 462
Bme18I GGWCC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 34, 358
BmrFI CCNGG 1 cut(s) 462
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 4 cut(s) 135, 305, 436, 484
BmuI ACTGGG 1 cut(s) 301
BplI GAGNNNNNCTC 2 cut(s) 390, 422
Bpu10I CCTNAGC 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 58, 90, 504, 559
BsaWI WCCGGW 1 cut(s) 359
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 460
Bse118I RCCGGY 2 cut(s) 104, 184
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 533
BseDI CCNNGG 4 cut(s) 58, 90, 504, 559
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 2 cut(s) 315, 460
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 2 cut(s) 423, 542
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 3 cut(s) 126, 316, 319
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 4 cut(s) 105, 185, 360, 461
BslI CCNNNNNNNGG 2 cut(s) 315, 460
BsmAI GTCTC 2 cut(s) 268, 547
BsmI GAATGC 2 cut(s) 228, 449
BsnI GGCC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 245
Bsp143I GATC 4 cut(s) 157, 371, 409, 566
BspACI CCGC 3 cut(s) 20, 168, 182
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 2 cut(s) 424, 543
BspLI GGNNCC 2 cut(s) 34, 358
BspPI GGATC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 533
BsrFI RCCGGY 2 cut(s) 104, 184
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 2 cut(s) 104, 184
BssECI CCNNGG 4 cut(s) 58, 90, 504, 559
BssMI GATC 4 cut(s) 157, 371, 409, 566
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 3 cut(s) 90, 504, 559
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 432, 551
BstF5I GGATG 1 cut(s) 454
BstH2I RGCGCY 2 cut(s) 26, 140
BstHHI GCGC 2 cut(s) 25, 139
BstKTI GATC 4 cut(s) 160, 374, 412, 569
BstMAI GTCTC 2 cut(s) 268, 547
BstMBI GATC 4 cut(s) 157, 371, 409, 566
BstMWI GCNNNNNNNGC 2 cut(s) 145, 326
BstSCI CCNGG 1 cut(s) 460
BstV1I GCAGC 3 cut(s) 126, 316, 319
BstX2I RGATCY 2 cut(s) 157, 371
BstYI RGATCY 2 cut(s) 157, 371
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 2 cut(s) 25, 139
Cfr10I RCCGGY 2 cut(s) 104, 184
Cfr13I GGNCC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 250
CviJI RGCY 7 cut(s) 47, 63, 221, 320, 329, 430, 436
CviKI_1 RGCY 7 cut(s) 47, 63, 221, 320, 329, 430, 436
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 432, 551
DpnI GATC 4 cut(s) 159, 373, 411, 568
DpnII GATC 4 cut(s) 157, 371, 409, 566
EciI GGCGGA 2 cut(s) 171, 183
Eco130I CCWWGG 3 cut(s) 90, 504, 559
Eco147I AGGCCT 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 245
EcoT14I CCWWGG 3 cut(s) 90, 504, 559
EcoT22I ATGCAT 1 cut(s) 451
ErhI CCWWGG 3 cut(s) 90, 504, 559
FaiI YATR 3 cut(s) 54, 341, 443
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 4 cut(s) 21, 140, 330, 333
FokI GGATG 1 cut(s) 441
Fsp4HI GCNGC 4 cut(s) 21, 140, 330, 333
FspBI CTAG 1 cut(s) 300
GlaI GCGC 2 cut(s) 24, 138
GluI GCNGC 4 cut(s) 21, 140, 330, 333
HaeII RGCGCY 2 cut(s) 26, 140
HaeIII GGCC 1 cut(s) 63
HapII CCGG 4 cut(s) 105, 185, 360, 461
HhaI GCGC 2 cut(s) 25, 139
Hin1I GRCGYC 1 cut(s) 123
Hin6I GCGC 2 cut(s) 23, 137
HinP1I GCGC 2 cut(s) 23, 137
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 3 cut(s) 5, 511, 555
HpaII CCGG 4 cut(s) 105, 185, 360, 461
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 4 cut(s) 207, 276, 398, 552
Hpy188III TCNNGA 6 cut(s) 161, 245, 300, 351, 369, 407
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 4 cut(s) 269, 449, 497, 538
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 326
HpyF3I CTNAG 2 cut(s) 432, 551
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 123
HspAI GCGC 2 cut(s) 23, 137
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 4 cut(s) 157, 371, 409, 566
LpnPI CCDG 8 cut(s) 118, 146, 198, 277, 336, 373, 444, 474
Lsp1109I GCAGC 3 cut(s) 126, 316, 319
LweI GCATC 4 cut(s) 135, 305, 436, 484
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 123
MalI GATC 4 cut(s) 159, 373, 411, 568
MboI GATC 4 cut(s) 157, 371, 409, 566
MboII GAAGA 4 cut(s) 220, 377, 404, 576
MflI RGATCY 2 cut(s) 157, 371
MluCI AATT 3 cut(s) 253, 467, 580
MlyI GAGTC 3 cut(s) 14, 520, 549
MnlI CCTC 9 cut(s) 53, 58, 74, 112, 164, 187, 282, 347, 468
Mph1103I ATGCAT 1 cut(s) 451
MreI CGCCGGCG 1 cut(s) 104
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 2 cut(s) 575, 583
MspI CCGG 4 cut(s) 105, 185, 360, 461
MspR9I CCNGG 1 cut(s) 462
Mva1269I GAATGC 2 cut(s) 228, 449
MwoI GCNNNNNNNGC 2 cut(s) 145, 326
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 462
NdeII GATC 4 cut(s) 157, 371, 409, 566
NgoMIV GCCGGC 1 cut(s) 104
NlaIV GGNNCC 2 cut(s) 34, 358
NsiI ATGCAT 1 cut(s) 451
PceI AGGCCT 1 cut(s) 63
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 140
PctI GAATGC 2 cut(s) 228, 449
PdiI GCCGGC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 315
PfoI TCCNGGA 1 cut(s) 460
PkrI GCNGC 4 cut(s) 22, 141, 331, 334
PleI GAGTC 3 cut(s) 13, 519, 549
PpsI GAGTC 3 cut(s) 13, 519, 549
PsiI TTATAA 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 34, 358
PspPI GGNCC 1 cut(s) 33
PsuI RGATCY 2 cut(s) 157, 371
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 575, 583
SatI GCNGC 4 cut(s) 21, 140, 330, 333
Sau3AI GATC 4 cut(s) 157, 371, 409, 566
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 3 cut(s) 14, 520, 549
ScrFI CCNGG 1 cut(s) 462
SetI ASST 6 cut(s) 126, 223, 274, 331, 358, 438
SfaNI GCATC 4 cut(s) 135, 305, 436, 484
SgrAI CRCCGGYG 2 cut(s) 104, 184
SinI GGWCC 1 cut(s) 33
Sse9I AATT 3 cut(s) 253, 467, 580
SseBI AGGCCT 1 cut(s) 63
SsiI CCGC 3 cut(s) 20, 168, 182
SspMI CTAG 1 cut(s) 300
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 460
StyI CCWWGG 3 cut(s) 90, 504, 559
TaiI ACGT 1 cut(s) 126
TaqI TCGA 4 cut(s) 8, 117, 126, 408
TasI AATT 3 cut(s) 253, 467, 580
TatI WGTACW 1 cut(s) 249
TauI GCSGC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 575, 583
Tru9I TTAA 2 cut(s) 575, 583
TseI GCWGC 3 cut(s) 139, 329, 332
TspDTI ATGAA 3 cut(s) 404, 409, 430
TspGWI ACGGA 2 cut(s) 25, 170
Van91I CCANNNNNTGG 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 467
XbaI TCTAGA 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 300
ZraI GACGTC 1 cut(s) 124
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.