RLG00000030089

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017410
Physical Location & Seq
Forward (+)
54985807 .. 54986538
732 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030089

Sequence Viewer

Length: 732 bp
ATGCCAAAGACTGCAAACCCGGGGAGGAGACATGCCACCTTGCTCAAGAAGGCAAATGAGTTATCTATTCTATGTGATGCAGAGGTCGCCGTCATCGCTTTTTCACCTGATGGAGAACTCCATGAATACTCGAGCACAAGCATGGAACACACTCTTGAAAGATACAAGAACAGGACTGGCCTCGTCCTCCCAAGCAGGGTCGAGTCTCTGGCGCCAGAAGAGCACCGCCATGAACCTGCAAAGCAGGAACTGCAGAAAAGACATAAAGCGTTACGCTTGGAGAAATTGCGGAGAATGGGAAAGGAGTTGGATGGCCTGAGTTCGGAAGAGCTGTCTACGCTTTTGGAACAACAAATTAAAGGGTTATTAGCTGTTCAGAGCAAGAAAGTGGAACTGCTTGAGGAGAAGTTGCAGAGATCTAGGTCGAGAGAAGAGCAGGCTATGCATGAGAATGAACTGCTTGAGGAGAAGTTGCTGAGATCTAGGTCAAGAGAAGAGCAGACTATGCACGAGAATGAGAGTCTGCGCAGAAGGATCTGGGGGTTCATGATGAGGCAAAACTACAAGCGACATATCCTTCCATGCCATCCAGCCAATTATTTGGATAGAAATTATGGAAATAGGATGGGTTTCTGCACAAGCTCAAGAGCTCCTGTTTCTGTTTCCAACCATCCATCGGAGGGAGCCGATGACCATTTAGACATGACCACTTTGCGGTTGTGGCCGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

244

Amino Acids

28.24

Weight (kDa)

8.72

Isoelectric Point (pI)

83.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 9 - 43 4.2e-15 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017410)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0326161
rosa_laevigata RLG00000030089
rosa_multiflora Rmu_co8253881.1_g000001 Rmu_sc0000028.1_g000010
rosa_roxburghii Rroxscaffold_4G00324030
rosa_rugosa Rorug01G0057400
rosa_samantha Rh1AG074300 Rh1BG059800 Rh1DG078300 Rh1DG079500
rosa_wichuraiana Rw0G003150 Rw0G020750 Rw1G005960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 527
Acc36I ACCTGC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 335
AciI CCGC 3 cut(s) 226, 289, 715
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 212
AfiI CCNNNNNNNGG 5 cut(s) 196, 322, 676, 680, 714
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 4 cut(s) 331, 371, 642, 650
AluI AGCT 4 cut(s) 331, 371, 642, 650
Alw21I GWGCWC 3 cut(s) 137, 225, 652
Alw26I GTCTC 2 cut(s) 22, 210
AlwI GGATC 1 cut(s) 542
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 2 cut(s) 19, 130
AoxI GGCC 3 cut(s) 178, 313, 722
AspLEI GCGC 2 cut(s) 214, 528
AsuC2I CCSGG 2 cut(s) 20, 21
AsuHPI GGTGA 1 cut(s) 96
AvaI CYCGRG 2 cut(s) 19, 130
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 652
BauI CACGAG 1 cut(s) 509
Bbv12I GWGCWC 3 cut(s) 137, 225, 652
BccI CCATC 6 cut(s) 104, 305, 594, 619, 678, 682
BceAI ACGGC 2 cut(s) 74, 709
BcnI CCSGG 2 cut(s) 20, 21
BcoDI GTCTC 2 cut(s) 22, 210
BfaI CTAG 2 cut(s) 420, 483
BfmI CTRYAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 244
BglII AGATCT 2 cut(s) 416, 479
Bme1390I CCNGG 2 cut(s) 20, 21
BmeT110I CYCGRG 2 cut(s) 19, 130
BmiI GGNNCC 2 cut(s) 213, 685
BmrFI CCNGG 2 cut(s) 20, 21
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 4 cut(s) 29, 419, 482, 628
BpuMI CCSGG 2 cut(s) 20, 21
BsaHI GRCGYC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 19, 20
Bsc4I CCNNNNNNNGG 5 cut(s) 196, 322, 676, 680, 714
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 19, 20
BseGI GGATG 4 cut(s) 316, 586, 630, 670
BseLI CCNNNNNNNGG 5 cut(s) 196, 322, 676, 680, 714
BseMII CTCAG 2 cut(s) 308, 467
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 3 cut(s) 40, 416, 479
BsgI GTGCAG 1 cut(s) 619
BshFI GGCC 3 cut(s) 180, 315, 724
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 3 cut(s) 137, 225, 652
BsiHKCI CYCGRG 2 cut(s) 19, 130
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 5 cut(s) 196, 322, 676, 680, 714
BsmAI GTCTC 2 cut(s) 22, 210
BsnI GGCC 3 cut(s) 180, 315, 724
BsoBI CYCGRG 2 cut(s) 19, 130
Bsp1286I GDGCHC 3 cut(s) 137, 225, 652
Bsp143I GATC 3 cut(s) 416, 479, 534
BspACI CCGC 3 cut(s) 226, 289, 715
BspANI GGCC 3 cut(s) 180, 315, 724
BspCNI CTCAG 2 cut(s) 309, 468
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 213, 685
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 542
BspQI GCTCTTC 4 cut(s) 213, 321, 426, 489
BspT107I GGYRCC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 19, 20
BssMI GATC 3 cut(s) 416, 479, 534
BssNI GRCGYC 1 cut(s) 212
BssSI CACGAG 1 cut(s) 509
Bst2BI CACGAG 1 cut(s) 509
Bst6I CTCTTC 4 cut(s) 213, 321, 426, 489
BstACI GRCGYC 1 cut(s) 212
BstAPI GCANNNNNTGC 3 cut(s) 250, 442, 505
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 2 cut(s) 317, 476
BstF5I GGATG 4 cut(s) 316, 586, 630, 670
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 214, 528
BstKTI GATC 3 cut(s) 419, 482, 537
BstMAI GTCTC 2 cut(s) 22, 210
BstMBI GATC 3 cut(s) 416, 479, 534
BstMWI GCNNNNNNNGC 8 cut(s) 86, 95, 220, 250, 337, 442, 505, 721
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 18, 19
BstSFI CTRYAG 1 cut(s) 251
BstX2I RGATCY 3 cut(s) 416, 479, 534
BstXI CCANNNNNNTGG 1 cut(s) 601
BstYI RGATCY 3 cut(s) 416, 479, 534
BsuRI GGCC 3 cut(s) 180, 315, 724
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 4 cut(s) 316, 586, 630, 670
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 438
CaiI CAGNNNCTG 1 cut(s) 250
CciI TCATGA 1 cut(s) 546
CfoI GCGC 2 cut(s) 214, 528
Cfr9I CCCGGG 1 cut(s) 19
CviAII CATG 8 cut(s) 32, 122, 142, 230, 446, 547, 582, 703
DdeI CTNAG 2 cut(s) 317, 476
DinI GGCGCC 1 cut(s) 213
DpnI GATC 3 cut(s) 418, 481, 536
DpnII GATC 3 cut(s) 416, 479, 534
EaeI YGGCCR 1 cut(s) 722
Eam1104I CTCTTC 4 cut(s) 213, 321, 426, 489
EarI CTCTTC 4 cut(s) 213, 321, 426, 489
Ecl136II GAGCTC 1 cut(s) 650
Eco24I GRGCYC 1 cut(s) 652
Eco53kI GAGCTC 1 cut(s) 650
Eco88I CYCGRG 2 cut(s) 19, 130
EcoICRI GAGCTC 1 cut(s) 650
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 652
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
FatI CATG 8 cut(s) 31, 121, 141, 229, 445, 546, 581, 702
FblI GTMKAC 1 cut(s) 335
FokI GGATG 4 cut(s) 323, 573, 637, 657
FriOI GRGCYC 1 cut(s) 652
FspBI CTAG 2 cut(s) 420, 483
FspI TGCGCA 1 cut(s) 527
GlaI GCGC 2 cut(s) 213, 527
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 3 cut(s) 180, 315, 724
HapII CCGG 1 cut(s) 20
HhaI GCGC 2 cut(s) 214, 528
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
Hin6I GCGC 2 cut(s) 212, 526
HinP1I GCGC 2 cut(s) 212, 526
HinfI GANTC 2 cut(s) 203, 520
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 3 cut(s) 325, 378, 679
Hpy188III TCNNGA 6 cut(s) 46, 155, 426, 489, 547, 645
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 43, 525, 587
HpyCH4V TGCA 8 cut(s) 14, 80, 239, 253, 412, 445, 508, 636
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 95, 220, 250, 337, 442, 505, 721
HpyF3I CTNAG 2 cut(s) 317, 476
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
HspAI GCGC 2 cut(s) 212, 526
KasI GGCGCC 1 cut(s) 211
Kzo9I GATC 3 cut(s) 416, 479, 534
LguI GCTCTTC 4 cut(s) 213, 321, 426, 489
LmnI GCTCC 2 cut(s) 655, 683
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 420, 483
MaeIII GTNAC 1 cut(s) 270
MalI GATC 3 cut(s) 418, 481, 536
MboI GATC 3 cut(s) 416, 479, 534
MboII GAAGA 4 cut(s) 230, 338, 443, 506
MflI RGATCY 3 cut(s) 416, 479, 534
MhlI GDGCHC 3 cut(s) 137, 225, 652
MluCI AATT 4 cut(s) 284, 354, 595, 610
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 2 cut(s) 212, 529
MmeI TCCRAC 2 cut(s) 288, 690
MnlI CCTC 8 cut(s) 18, 76, 191, 197, 394, 457, 546, 673
Mph1103I ATGCAT 1 cut(s) 447
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 4 cut(s) 140, 228, 450, 513
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 20, 21
MwoI GCNNNNNNNGC 8 cut(s) 86, 95, 220, 250, 337, 442, 505, 721
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 20, 21
NdeII GATC 3 cut(s) 416, 479, 534
NlaIII CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
NlaIV GGNNCC 2 cut(s) 213, 685
NsbI TGCGCA 1 cut(s) 527
NsiI ATGCAT 1 cut(s) 447
NspI RCATGY 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 130
PagI TCATGA 1 cut(s) 546
PciSI GCTCTTC 4 cut(s) 213, 321, 426, 489
PleI GAGTC 2 cut(s) 211, 528
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 2 cut(s) 211, 528
Psp124BI GAGCTC 1 cut(s) 652
PspN4I GGNNCC 2 cut(s) 213, 685
PspXI VCTCGAGB 1 cut(s) 130
PstI CTGCAG 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 3 cut(s) 416, 479, 534
RseI CAYNNNNRTG 4 cut(s) 140, 228, 450, 513
SacI GAGCTC 1 cut(s) 652
SapI GCTCTTC 4 cut(s) 213, 321, 426, 489
SaqAI TTAA 1 cut(s) 357
Sau3AI GATC 3 cut(s) 416, 479, 534
SchI GAGTC 2 cut(s) 212, 529
ScrFI CCNGG 2 cut(s) 20, 21
SduI GDGCHC 3 cut(s) 137, 225, 652
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 251
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 130
SmaI CCCGGG 1 cut(s) 21
SmiMI CAYNNNNRTG 4 cut(s) 140, 228, 450, 513
SmlI CTYRAG 5 cut(s) 44, 130, 398, 461, 643
SmoI CTYRAG 5 cut(s) 44, 130, 398, 461, 643
Sse9I AATT 4 cut(s) 284, 354, 595, 610
SsiI CCGC 3 cut(s) 226, 289, 715
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 2 cut(s) 420, 483
SstI GAGCTC 1 cut(s) 652
StyD4I CCNGG 2 cut(s) 18, 19
TaqI TCGA 3 cut(s) 131, 201, 425
TasI AATT 4 cut(s) 284, 354, 595, 610
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TspDTI ATGAA 4 cut(s) 138, 246, 468, 535
TspMI CCCGGG 1 cut(s) 19
XceI RCATGY 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 130
XmaI CCCGGG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 2 cut(s) 420, 483
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.