Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021319

Physical Location & Seq

Genomic Coordinates Reverse (-)

24233720 .. 24237308

Gene Structure 3589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTCCTGTGGTACTTGTTCTTTCATGCCTTCCATGCCAATATGCCATTATTTGTGGGAGGAGTGCATAAGCCTTCGAGAAGTTAAGTCATTGCGTAGAATGAATCATCCAAATATTGTAAAGCTCAAGGAAGTCATCAGAGAACATGACATCTTGTACTTTGTGTTTGAATATATGCTTATGAAAATAAGGAAAAGCTTTTCCCTGAAGCTCAAGTCAGAAATTGGTGTTTTCAAGTTTTTCAAGGCCATGCTTACGTGCAAAGGAGATGGAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

93

Amino Acids

11.05

Weight (kDa)

8.87

Isoelectric Point (pI)

64.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	24 - 62	5.9e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021319)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332681
rosa_roxburghii	Rroxscaffold_2G00115190
rosa_samantha	Rh2AG279300 Rh2DG285200 Rh2DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	13, 158
AgsI	TTSAA	3 cut(s)	170, 235, 244
AluBI	AGCT	3 cut(s)	124, 198, 211
AluI	AGCT	3 cut(s)	124, 198, 211
AoxI	GGCC	1 cut(s)	246
BccI	CCATC	1 cut(s)	263
BpuEI	CTTGAG	2 cut(s)	110, 197
BsaAI	YACGTR	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	248
BspANI	GGCC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	12, 157
CviAII	CATG	4 cut(s)	25, 34, 146, 250
CviJI	RGCY	5 cut(s)	72, 124, 198, 211, 248
CviKI_1	RGCY	5 cut(s)	72, 124, 198, 211, 248
CviQI	GTAC	2 cut(s)	12, 157
Eco57I	CTGAAG	1 cut(s)	227
FaeI	CATG	4 cut(s)	28, 37, 149, 253
FaiI	YATR	9 cut(s)	26, 35, 43, 68, 147, 174, 176, 182, 251
FatI	CATG	4 cut(s)	24, 33, 145, 249
FokI	GGATG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	28, 37, 149, 253
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	140, 220
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	39, 83
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	2 cut(s)	66, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	4 cut(s)	28, 37, 149, 253
LpnPI	CCDG	2 cut(s)	19, 218
MaeII	ACGT	1 cut(s)	257
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	1 cut(s)	52
MseI	TTAA	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	34
NlaIII	CATG	4 cut(s)	28, 37, 149, 253
PfeI	GAWTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	258
RsaI	GTAC	2 cut(s)	13, 158
RsaNI	GTAC	2 cut(s)	12, 157
SaqAI	TTAA	1 cut(s)	84
SetI	ASST	4 cut(s)	126, 200, 213, 260
SmlI	CTYRAG	2 cut(s)	125, 212
SmoI	CTYRAG	2 cut(s)	125, 212
Sse9I	AATT	1 cut(s)	222
SspI	AATATT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	76
TasI	AATT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TspDTI	ATGAA	3 cut(s)	13, 116, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.