Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0021319

Physical Location & Seq

Genomic Coordinates Forward (+)

36542666 .. 36543089

Gene Structure 424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG304300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAAAAGATATTATTCGTGGGAGGAGTGCATAAGTCTTCGAGAAGTTAAGTCATTGCGTAGAATGAATCATCCAAATATTGTAAAGCTCAAGGAAGTCATCAGGGAACGTGACATCTTGTACTTTGTGTTTGAATATATGGAGTTTAATCTGTACCAACTTATGAAAATAAGGAAAAGCTTTTCCCTGAAGCTCAAGTCAGAAATTGGTGTTTTCAAGTTTTTCAAGGCAATGCTTACATGCAAAGGAGATGGAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

87

Amino Acids

10.7

Weight (kDa)

9.45

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	11 - 62	5.4e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0021319)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332681
rosa_roxburghii	Rroxscaffold_2G00115190
rosa_samantha	Rh2AG279300 Rh2DG285200 Rh2DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	122, 155
AgsI	TTSAA	3 cut(s)	134, 217, 226
AluBI	AGCT	3 cut(s)	88, 180, 193
AluI	AGCT	3 cut(s)	88, 180, 193
BbsI	GAAGAC	1 cut(s)	29
BccI	CCATC	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	74, 179
Bse3DI	GCAATG	2 cut(s)	53, 237
BseGI	GGATG	1 cut(s)	70
BseMI	GCAATG	2 cut(s)	53, 237
BseRI	GAGGAG	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	53, 237
BstF5I	GGATG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	121, 154
CviAII	CATG	1 cut(s)	240
CviJI	RGCY	3 cut(s)	88, 180, 193
CviKI_1	RGCY	3 cut(s)	88, 180, 193
CviQI	GTAC	2 cut(s)	121, 154
Eco57I	CTGAAG	1 cut(s)	209
FaeI	CATG	1 cut(s)	243
FaiI	YATR	5 cut(s)	32, 138, 140, 164, 241
FatI	CATG	1 cut(s)	239
FokI	GGATG	1 cut(s)	57
Hin1II	CATG	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	30, 243
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	1 cut(s)	243
LpnPI	CCDG	2 cut(s)	88, 200
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	110
MboII	GAAGA	1 cut(s)	29
MluCI	AATT	1 cut(s)	204
MnlI	CCTC	1 cut(s)	16
MseI	TTAA	2 cut(s)	48, 147
NlaIII	CATG	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	67
RsaI	GTAC	2 cut(s)	122, 155
RsaNI	GTAC	2 cut(s)	121, 154
SaqAI	TTAA	2 cut(s)	48, 147
SetI	ASST	4 cut(s)	90, 112, 182, 195
SmlI	CTYRAG	2 cut(s)	89, 194
SmoI	CTYRAG	2 cut(s)	89, 194
Sse9I	AATT	1 cut(s)	204
SspI	AATATT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	204
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	48, 147
Tru9I	TTAA	2 cut(s)	48, 147
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	17, 80, 179
XceI	RCATGY	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.