Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0021319

Physical Location & Seq

Genomic Coordinates Forward (+)

32827066 .. 32836883

Gene Structure 9818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG285200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCTGTGCTGAGATCTGAGGCTCACGCGCATCGATCTCATGTTGCCGTCGAGCATGGCCATGGTAGGTTGCAATCTAAAAAAATGAAGAAAAGATATTATTCGTGGGAGGAGTGCATAAGTCTTCGAGAAGTTAAGTCATTGCGTAGAATGAATCATCCAAATATTGTAAAGCTCAAGGAAGTCATCAGGGAACATGACATCTTGTACTTTGTGTTTGAATATATGGAGTTTAATCTGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

81

Amino Acids

9.9

Weight (kDa)

9.56

Isoelectric Point (pI)

68.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	26 - 77	1.2e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021319)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332681
rosa_roxburghii	Rroxscaffold_2G00115190
rosa_samantha	Rh2AG279300 Rh2DG285200 Rh2DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	58
AfaI	GTAC	2 cut(s)	209, 242
AgsI	TTSAA	1 cut(s)	221
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
AoxI	GGCC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	244
BglII	AGATCT	1 cut(s)	14
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	140
BseCI	ATCGAT	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	9
BseRI	GAGGAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	60
BshVI	ATCGAT	1 cut(s)	34
BsnI	GGCC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	14, 35
Bsp19I	CCATGG	1 cut(s)	61
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	10
BspDI	ATCGAT	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	2 cut(s)	14, 35
BssT1I	CCWWGG	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	11, 18
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	17, 38
BstMBI	GATC	2 cut(s)	14, 35
BstUI	CGCG	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	208, 241
CviAII	CATG	4 cut(s)	41, 56, 62, 197
CviJI	RGCY	4 cut(s)	5, 23, 60, 175
CviKI_1	RGCY	4 cut(s)	5, 23, 60, 175
CviQI	GTAC	2 cut(s)	208, 241
DdeI	CTNAG	2 cut(s)	11, 18
DpnI	GATC	2 cut(s)	16, 37
DpnII	GATC	2 cut(s)	14, 35
EaeI	YGGCCR	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	4 cut(s)	44, 59, 65, 200
FaiI	YATR	7 cut(s)	42, 57, 63, 119, 198, 225, 227
FatI	CATG	4 cut(s)	40, 55, 61, 196
FokI	GGATG	1 cut(s)	144
FspBI	CTAG	1 cut(s)	244
GlaI	GCGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	4 cut(s)	44, 59, 65, 200
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	73, 117
HpyF3I	CTNAG	2 cut(s)	11, 18
Hsp92II	CATG	4 cut(s)	44, 59, 65, 200
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	14, 35
LpnPI	CCDG	1 cut(s)	175
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	244
MalI	GATC	2 cut(s)	16, 37
MboI	GATC	2 cut(s)	14, 35
MboII	GAAGA	2 cut(s)	100, 116
MflI	RGATCY	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	60
MluNI	TGGCCA	1 cut(s)	60
MnlI	CCTC	2 cut(s)	13, 103
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	2 cut(s)	135, 234
MslI	CAYNNNNRTG	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	60
MvnI	CGCG	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	14, 35
NlaIII	CATG	4 cut(s)	44, 59, 65, 200
PfeI	GAWTC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	2 cut(s)	209, 242
RsaNI	GTAC	2 cut(s)	208, 241
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	135, 234
Sau3AI	GATC	2 cut(s)	14, 35
SetI	ASST	2 cut(s)	71, 177
SfaNI	GCATC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	61
TaqI	TCGA	3 cut(s)	34, 51, 127
TatI	WGTACW	2 cut(s)	207, 240
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	135, 234
Tru9I	TTAA	2 cut(s)	135, 234
TspDTI	ATGAA	2 cut(s)	101, 167
XspI	CTAG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.