Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0021319

Physical Location & Seq

Genomic Coordinates Forward (+)

33528971 .. 33532068

Gene Structure 3098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG279300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAATAAGGCACATGCTTCATATTATTATTTTTATTTTTTAGTCTTCTGCTTAGAATCAGTTGGACATTTTTACAGGTTGCAATCTAAAAAAATGAAAAGATATTATTCGTGGGAGGAGTGCATAAGTCTTCGAGAAGTTAAGTCATTGCGTAGAATGAATCATCCAAATATTGTAAAGCTCAAGGAAGTCATCAGGGAACGTGACATCTTGTACTTTGTGTTTGAATATATGGAGTTTAATCTGTACCGGCTTATGAAAATAAGGAAAAGCTTTTCCTTGAAGCTCAAGTCAGAAATTGGTGTTTTCAAGTTTTTCAAGGCAATGCTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

111

Amino Acids

13.83

Weight (kDa)

9.82

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	37 - 93	5.4e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021319)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332681
rosa_roxburghii	Rroxscaffold_2G00115190
rosa_samantha	Rh2AG279300 Rh2DG285200 Rh2DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	215, 248
AgsI	TTSAA	4 cut(s)	227, 283, 310, 319
AluBI	AGCT	3 cut(s)	181, 273, 286
AluI	AGCT	3 cut(s)	181, 273, 286
BbsI	GAAGAC	2 cut(s)	37, 122
BpiI	GAAGAC	2 cut(s)	37, 122
BpuEI	CTTGAG	2 cut(s)	167, 272
Bse118I	RCCGGY	1 cut(s)	249
Bse3DI	GCAATG	2 cut(s)	146, 330
BseGI	GGATG	1 cut(s)	163
BseMI	GCAATG	2 cut(s)	146, 330
BseRI	GAGGAG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	146, 330
BsrFI	RCCGGY	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	37, 122
BtsCI	GGATG	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	214, 247
CviAII	CATG	2 cut(s)	14, 333
CviJI	RGCY	4 cut(s)	181, 253, 273, 286
CviKI_1	RGCY	4 cut(s)	181, 253, 273, 286
CviQI	GTAC	2 cut(s)	214, 247
DdeI	CTNAG	1 cut(s)	52
FaeI	CATG	2 cut(s)	17, 336
FaiI	YATR	7 cut(s)	15, 22, 125, 231, 233, 257, 334
FatI	CATG	2 cut(s)	13, 332
FokI	GGATG	1 cut(s)	150
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	2 cut(s)	17, 336
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	2 cut(s)	56, 160
HpaII	CCGG	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	82, 123
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	2 cut(s)	17, 336
LpnPI	CCDG	3 cut(s)	61, 181, 263
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	203
MboII	GAAGA	2 cut(s)	37, 122
MluCI	AATT	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	1 cut(s)	109
MseI	TTAA	2 cut(s)	141, 240
MspI	CCGG	1 cut(s)	250
NlaIII	CATG	2 cut(s)	17, 336
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	56, 160
RsaI	GTAC	2 cut(s)	215, 248
RsaNI	GTAC	2 cut(s)	214, 247
SaqAI	TTAA	2 cut(s)	141, 240
SetI	ASST	5 cut(s)	80, 183, 205, 275, 288
SmlI	CTYRAG	2 cut(s)	182, 287
SmoI	CTYRAG	2 cut(s)	182, 287
Sse9I	AATT	1 cut(s)	297
SspI	AATATT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	297
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	56, 160
Tru1I	TTAA	2 cut(s)	141, 240
Tru9I	TTAA	2 cut(s)	141, 240
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	5 cut(s)	9, 17, 110, 173, 272
XceI	RCATGY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.