Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021327

Physical Location & Seq

Genomic Coordinates Forward (+)

25239788 .. 25240597

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56203

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTTTCCGTTAGTTTTCTCTACTCATTGTAAGTGTTGCAACTTTCATATTATTTTACAACATTTTATGCCTTTGCAAATTGCAGCTAATAGTTCTGATCAAACGAAGGATCAGGATCTGTTATCTCACCCGTTGAAGAGCCTAGCCAATCTTGCTGGTACAATTGATGGGAGAAACATATCTGCATTACTTCAGGCATCTCAAGGTTTACCTAACACTGGGTCTTGCATCAAGACTGCACAACAGGTTCCAGATACGGTTTCCAACATCTTTGAACCCAGTAGGCTTTCTGTTTCTGCCTCAAGTATGGATGATTGTGTTATTATTGAGGAACCTTTAAGGCCCATAGGACAGCGCCCGATATTACCTGCATCAGATATGCAAAAGCGAAGATCTTCAATTGATGGCGATCTTGGAAGTCAAATTACTTCAGCATGCACAAATCGCACAGACCGCATTGTTTTTAAACTCTTTGGAAAAGACCCGAATGAACTTCCATTTGTTCTGCGATCACAGATCATCGACTGGTTATCCCATAGTCCTACAGAGATTGAAAGCTATATAAGGCCAAGATGCATCATTTTGACAATTTACCTCCATCTAGAAAAATCCATGTGGGAGGAGGTGTGCTTCTGTTGTGATGCCGGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

217

Amino Acids

24.17

Weight (kDa)

5.84

Isoelectric Point (pI)

64.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021327)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333221 RchiOBHm_Chr7g0225661
rosa_multiflora	Rmu_sc0001214.1_g000047
rosa_samantha	Rh3CG372000 Rh7DG377300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AciI	CCGC	1 cut(s)	454
AclWI	GGATC	2 cut(s)	117, 123
AcuI	CTGAAG	2 cut(s)	176, 414
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	136, 275, 399, 554
AluBI	AGCT	2 cut(s)	86, 558
AluI	AGCT	2 cut(s)	86, 558
AlwI	GGATC	2 cut(s)	117, 123
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	2 cut(s)	341, 566
ApeKI	GCWGC	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	342
AsuHPI	GGTGA	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	409, 441
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	3 cut(s)	161, 398, 606
BclI	TGATCA	1 cut(s)	97
BfaI	CTAG	2 cut(s)	143, 602
BfmI	CTRYAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	2 cut(s)	249, 333
BmrI	ACTGGG	2 cut(s)	228, 273
BmsI	GCATC	6 cut(s)	206, 237, 380, 563, 585, 631
BmuI	ACTGGG	2 cut(s)	228, 273
BpuEI	CTTGAG	2 cut(s)	186, 286
BsaBI	GATNNNNATC	2 cut(s)	114, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	223, 279, 530
Bse8I	GATNNNNATC	2 cut(s)	114, 408
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	2 cut(s)	114, 408
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseNI	ACTGG	3 cut(s)	223, 279, 530
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	343, 568
BsiSI	CCGG	1 cut(s)	645
BslI	CCNNNNNNNGG	1 cut(s)	218
BsnI	GGCC	2 cut(s)	343, 568
Bsp143I	GATC	7 cut(s)	97, 109, 115, 392, 409, 509, 516
BspACI	CCGC	1 cut(s)	454
BspANI	GGCC	2 cut(s)	343, 568
BspLI	GGNNCC	2 cut(s)	249, 333
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	117, 123
BspQI	GCTCTTC	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	223, 279, 530
BssMI	GATC	7 cut(s)	97, 109, 115, 392, 409, 509, 516
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	7 cut(s)	100, 112, 118, 395, 412, 512, 519
BstMBI	GATC	7 cut(s)	97, 109, 115, 392, 409, 509, 516
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 444, 453
BstNSI	RCATGY	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	115, 392
BstYI	RGATCY	2 cut(s)	115, 392
BsuRI	GGCC	2 cut(s)	343, 568
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	436
CaiI	CAGNNNCTG	1 cut(s)	118
CfoI	GCGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	2 cut(s)	435, 613
CviJI	RGCY	7 cut(s)	86, 141, 146, 286, 343, 558, 568
CviKI_1	RGCY	7 cut(s)	86, 141, 146, 286, 343, 558, 568
CviQI	GTAC	1 cut(s)	159
DpnI	GATC	7 cut(s)	99, 111, 117, 394, 411, 511, 518
DpnII	GATC	7 cut(s)	97, 109, 115, 392, 409, 509, 516
DraI	TTTAAA	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	176, 414
EcoT22I	ATGCAT	1 cut(s)	578
FaeI	CATG	2 cut(s)	438, 616
FatI	CATG	2 cut(s)	434, 612
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	2 cut(s)	143, 602
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	343, 568
HapII	CCGG	1 cut(s)	645
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	438, 616
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	2 cut(s)	97, 376
Hpy188III	TCNNGA	4 cut(s)	113, 232, 251, 602
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 444, 453
Hsp92II	CATG	2 cut(s)	438, 616
HspAI	GCGC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	7 cut(s)	97, 109, 115, 392, 409, 509, 516
LguI	GCTCTTC	1 cut(s)	131
LpnPI	CCDG	9 cut(s)	98, 141, 179, 204, 230, 264, 292, 381, 511
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	6 cut(s)	206, 237, 380, 563, 585, 631
MaeI	CTAG	2 cut(s)	143, 602
MalI	GATC	7 cut(s)	99, 111, 117, 394, 411, 511, 518
MboI	GATC	7 cut(s)	97, 109, 115, 392, 409, 509, 516
MboII	GAAGA	3 cut(s)	148, 387, 402
MfeI	CAATTG	2 cut(s)	162, 399
MflI	RGATCY	2 cut(s)	115, 392
MluCI	AATT	5 cut(s)	78, 162, 399, 423, 588
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	5 cut(s)	310, 322, 605, 613, 616
Mph1103I	ATGCAT	1 cut(s)	578
MroXI	GAANNNNTTC	1 cut(s)	394
MseI	TTAA	2 cut(s)	338, 465
MspI	CCGG	1 cut(s)	645
MunI	CAATTG	2 cut(s)	162, 399
MwoI	GCNNNNNNNGC	3 cut(s)	152, 444, 453
NdeII	GATC	7 cut(s)	97, 109, 115, 392, 409, 509, 516
NlaIII	CATG	2 cut(s)	438, 616
NlaIV	GGNNCC	2 cut(s)	249, 333
NsiI	ATGCAT	1 cut(s)	578
NspI	RCATGY	1 cut(s)	438
PaeI	GCATGC	1 cut(s)	438
PciSI	GCTCTTC	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	249, 333
PspPI	GGNCC	1 cut(s)	342
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	115, 392
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	338, 465
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	7 cut(s)	97, 109, 115, 392, 409, 509, 516
Sau96I	GGNCC	1 cut(s)	342
SetI	ASST	9 cut(s)	88, 208, 214, 249, 337, 370, 560, 597, 627
SfaNI	GCATC	6 cut(s)	206, 237, 380, 563, 585, 631
SfcI	CTRYAG	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	201, 301
SmoI	CTYRAG	2 cut(s)	201, 301
SphI	GCATGC	1 cut(s)	438
Sse9I	AATT	5 cut(s)	78, 162, 399, 423, 588
SsiI	CCGC	1 cut(s)	454
SspMI	CTAG	2 cut(s)	143, 602
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	522
TasI	AATT	5 cut(s)	78, 162, 399, 423, 588
Tru1I	TTAA	2 cut(s)	338, 465
Tru9I	TTAA	2 cut(s)	338, 465
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	35, 504
TspRI	CASTG	1 cut(s)	223
XbaI	TCTAGA	1 cut(s)	601
XceI	RCATGY	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	2 cut(s)	143, 602
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.