Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001214.1

Orthogroup ID

OG0021327

Physical Location & Seq

Genomic Coordinates Forward (+)

195518 .. 195925

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001214.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgcctttgcaaattgcagctaatagttctgatcaaacgaaagatcaggatctgctatctcacccgttgaagagcctagccaatcttgctggtacagttgatgggagaaacatatctacattacttcaggcatctcaaagtttacctaacactgggtcttgcatcaagactgcacaacaggttctagatacggtttccaacatctttgaacgcagtaggctttctatttctgcctcaagtatggatgattgtgttattattgaggaacctttaaggcccataggacagcgctcgatattacctgcatcagatatgcaaaagcgaagatcttcagttgatggcgatcttggaagtcaaattacttcagcatgcacagttttttttttgcaaaatatcaaaatcgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

135

Amino Acids

14.5

Weight (kDa)

5.69

Isoelectric Point (pI)

76.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021327)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333221 RchiOBHm_Chr7g0225661
rosa_multiflora	Rmu_sc0001214.1_g000047
rosa_samantha	Rh3CG372000 Rh7DG377300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	57
AcuI	CTGAAG	3 cut(s)	110, 315, 348
AfaI	GTAC	1 cut(s)	94
AfeI	AGCGCT	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	70, 209
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
AlwI	GGATC	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	52
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	2 cut(s)	95, 332
BclI	TGATCA	1 cut(s)	31
BfaI	CTAG	2 cut(s)	77, 185
BfoI	RGCGCY	1 cut(s)	292
BfuAI	ACCTGC	1 cut(s)	310
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	3 cut(s)	140, 171, 314
BmuI	ACTGGG	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	220
BsaBI	GATNNNNATC	2 cut(s)	48, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	2 cut(s)	48, 342
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	2 cut(s)	48, 342
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	152
BsnI	GGCC	1 cut(s)	277
Bsp143I	GATC	5 cut(s)	31, 43, 49, 326, 343
BspANI	GGCC	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	5 cut(s)	31, 43, 49, 326, 343
Bst4CI	ACNGT	3 cut(s)	97, 193, 376
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	370
BstF5I	GGATG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	5 cut(s)	34, 46, 52, 329, 346
BstMBI	GATC	5 cut(s)	31, 43, 49, 326, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	2 cut(s)	49, 326
BstYI	RGATCY	2 cut(s)	49, 326
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	370
CaiI	CAGNNNCTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	1 cut(s)	369
CviJI	RGCY	5 cut(s)	20, 75, 80, 220, 277
CviKI_1	RGCY	5 cut(s)	20, 75, 80, 220, 277
CviQI	GTAC	1 cut(s)	93
DpnI	GATC	5 cut(s)	33, 45, 51, 328, 345
DpnII	GATC	5 cut(s)	31, 43, 49, 326, 343
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco47III	AGCGCT	1 cut(s)	290
Eco57I	CTGAAG	3 cut(s)	110, 315, 348
FaeI	CATG	1 cut(s)	372
FaiI	YATR	6 cut(s)	113, 242, 281, 314, 370, 406
FatI	CATG	1 cut(s)	368
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	77, 185
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	372
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	31, 310
Hpy188III	TCNNGA	3 cut(s)	47, 166, 185
Hpy8I	GTNNAC	1 cut(s)	143
HpyCH4III	ACNGT	3 cut(s)	97, 193, 376
HpyCH4V	TGCA	8 cut(s)	10, 17, 162, 173, 305, 316, 372, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	372
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	31, 43, 49, 326, 343
LguI	GCTCTTC	1 cut(s)	65
LpnPI	CCDG	6 cut(s)	32, 75, 113, 138, 164, 315
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	3 cut(s)	140, 171, 314
MaeI	CTAG	2 cut(s)	77, 185
MalI	GATC	5 cut(s)	33, 45, 51, 328, 345
MboI	GATC	5 cut(s)	31, 43, 49, 326, 343
MboII	GAAGA	3 cut(s)	82, 321, 336
MflI	RGATCY	2 cut(s)	49, 326
MluCI	AATT	2 cut(s)	12, 357
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	244, 256
MroXI	GAANNNNTTC	1 cut(s)	328
MseI	TTAA	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	5 cut(s)	31, 43, 49, 326, 343
NlaIII	CATG	1 cut(s)	372
NlaIV	GGNNCC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	372
PaeI	GCATGC	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	2 cut(s)	49, 326
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	5 cut(s)	31, 43, 49, 326, 343
Sau96I	GGNCC	1 cut(s)	276
SetI	ASST	5 cut(s)	22, 148, 183, 271, 304
SfaNI	GCATC	3 cut(s)	140, 171, 314
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
SphI	GCATGC	1 cut(s)	372
Sse9I	AATT	2 cut(s)	12, 357
SspMI	CTAG	2 cut(s)	77, 185
TaaI	ACNGT	3 cut(s)	97, 193, 376
TaqI	TCGA	1 cut(s)	293
TasI	AATT	2 cut(s)	12, 357
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	1 cut(s)	17
TspRI	CASTG	1 cut(s)	157
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	328
XspI	CTAG	2 cut(s)	77, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.