RchiOBHm_Chr7g0225661

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0021327
Physical Location & Seq
Forward (+)
48505064 .. 48506793
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20211

Sequence Viewer

Length: 735 bp
ATGTTTCAGTTAGTTTTCTCTACTCATTGTAAGTGTTCCATTTTTCATATTATTTTACAACATTTTATGCCTTTGCAAATTGCAGCTAATAGTTCTGATCAAACGAAGGATCAGGATCTACTATCTCACCCGTTGAAGAGCCTAGCCAATCTTGCTAGTACAGTTGATGGGAGAAACATATCTGCATTACTTCAGGCATCTCAAGGTTTACCTAACACTGGGTCTTCCATCAAGACTGCACAACAGGTTCCAGATACGGTTTCCAACATCTTTGAACCCGGTAGGCTTTCTGTTTCTGCCTCAAGTATGGATGATTGTGTTATTATTGAGGAACCTTTAAGGCCCATAGGACAGCGCCCGATATTACTTGCATCAGATATGCAAAAGCGAAGATCTTCAGTTGATGGTGATCTTGGAAGTCAAATTACTTCAGCATGCACAATTATCGACTGGTTATCCCATAGTCCTACAGAGATTGAAAGCTATATAAGGCCAGGATGCATCATTTTGACAATTTACCTCCGTCTAGAAAAATCCACGTGGGAGGAGGTGTGCTTCTGTTATGATGTCGGAATGTTACTATGTGCTCTAGAAGGGAAGTATATGGCCCAAGAAGCTTGTGATGACATGATGGATGGTGCTGATACAACTGTTGAGCATGATGAGCTACAGTGCATCAGATTCTCCTGGTCTATACCAAATGTTACTGGGCGAGGATTCATTGAGATTTGTTAA

Protein Analysis

244

Amino Acids

26.97

Weight (kDa)

4.74

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ig_SPL7 PF26102 193 - 243 1e-12 SPL7-like, immunoglobulin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021327)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0333221 RchiOBHm_Chr7g0225661
rosa_multiflora Rmu_sc0001214.1_g000047
rosa_samantha Rh3CG372000 Rh7DG377300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 117, 123
AcuI CTGAAG 3 cut(s) 176, 381, 414
AcvI CACGTG 1 cut(s) 540
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 3 cut(s) 136, 275, 479
AjnI CCWGG 2 cut(s) 493, 686
AluBI AGCT 4 cut(s) 86, 483, 617, 667
AluI AGCT 4 cut(s) 86, 483, 617, 667
Alw21I GWGCWC 1 cut(s) 589
AlwI GGATC 2 cut(s) 117, 123
AoxI GGCC 3 cut(s) 341, 491, 606
ApeKI GCWGC 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 394
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 2 cut(s) 342, 607
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 119, 419
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BarI GAAGNNNNNNTAC 2 cut(s) 409, 441
BbrPI CACGTG 1 cut(s) 540
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 1 cut(s) 95
BccI CCATC 5 cut(s) 161, 236, 398, 625, 629
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 2 cut(s) 495, 688
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 1 cut(s) 279
BfaI CTAG 4 cut(s) 143, 156, 527, 590
BfmI CTRYAG 2 cut(s) 468, 668
BfoI RGCGCY 1 cut(s) 358
BglII AGATCT 1 cut(s) 392
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 3 cut(s) 279, 495, 688
BmgT120I GGNCC 2 cut(s) 342, 607
BmiI GGNNCC 2 cut(s) 249, 333
BmrFI CCNGG 3 cut(s) 279, 495, 688
BmrI ACTGGG 2 cut(s) 228, 717
BmsI GCATC 5 cut(s) 206, 380, 488, 510, 684
BmuI ACTGGG 2 cut(s) 228, 717
BpiI GAAGAC 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 186, 286
BpuMI CCSGG 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 540
BsaBI GATNNNNATC 2 cut(s) 114, 408
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 223, 455, 712
Bse8I GATNNNNATC 2 cut(s) 114, 408
BseBI CCWGG 2 cut(s) 495, 688
BseGI GGATG 3 cut(s) 316, 503, 640
BseJI GATNNNNATC 2 cut(s) 114, 408
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 3 cut(s) 223, 455, 712
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 3 cut(s) 343, 493, 608
BsiHKAI GWGCWC 1 cut(s) 589
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 218
BsnI GGCC 3 cut(s) 343, 493, 608
Bsp1286I GDGCHC 1 cut(s) 589
Bsp143I GATC 5 cut(s) 97, 109, 115, 392, 409
BspANI GGCC 3 cut(s) 343, 493, 608
BspLI GGNNCC 2 cut(s) 249, 333
BspPI GGATC 2 cut(s) 117, 123
BspQI GCTCTTC 1 cut(s) 131
BsrI ACTGG 3 cut(s) 223, 455, 712
BssMI GATC 5 cut(s) 97, 109, 115, 392, 409
Bst2UI CCWGG 2 cut(s) 495, 688
Bst4CI ACNGT 4 cut(s) 163, 259, 652, 672
Bst6I CTCTTC 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 540
BstC8I GCNNGC 1 cut(s) 436
BstF5I GGATG 3 cut(s) 316, 503, 640
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 5 cut(s) 100, 112, 118, 395, 412
BstMBI GATC 5 cut(s) 97, 109, 115, 392, 409
BstMWI GCNNNNNNNGC 3 cut(s) 152, 614, 664
BstNI CCWGG 2 cut(s) 495, 688
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 3 cut(s) 277, 493, 686
BstSFI CTRYAG 2 cut(s) 468, 668
BstV1I GCAGC 1 cut(s) 95
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 2 cut(s) 115, 392
BstYI RGATCY 2 cut(s) 115, 392
BsuRI GGCC 3 cut(s) 343, 493, 608
BtsCI GGATG 3 cut(s) 316, 503, 640
BtsIMutI CAGTG 2 cut(s) 216, 677
Cac8I GCNNGC 1 cut(s) 436
CfoI GCGC 1 cut(s) 357
Cfr13I GGNCC 2 cut(s) 342, 607
Csp6I GTAC 1 cut(s) 159
CviAII CATG 3 cut(s) 435, 628, 659
CviQI GTAC 1 cut(s) 159
DpnI GATC 5 cut(s) 99, 111, 117, 394, 411
DpnII GATC 5 cut(s) 97, 109, 115, 392, 409
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco57I CTGAAG 3 cut(s) 176, 381, 414
Eco72I CACGTG 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 493, 686
EcoT22I ATGCAT 1 cut(s) 503
FaeI CATG 3 cut(s) 438, 631, 662
FatI CATG 3 cut(s) 434, 627, 658
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 3 cut(s) 323, 510, 647
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 4 cut(s) 143, 156, 527, 590
GlaI GCGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 3 cut(s) 343, 493, 608
HapII CCGG 1 cut(s) 279
HhaI GCGC 1 cut(s) 357
Hin1II CATG 3 cut(s) 438, 631, 662
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 615
HinfI GANTC 2 cut(s) 681, 717
HpaII CCGG 1 cut(s) 279
HphI GGTGA 2 cut(s) 119, 419
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 4 cut(s) 97, 376, 572, 680
Hpy188III TCNNGA 5 cut(s) 113, 232, 251, 527, 590
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 100, 587
HpyCH4III ACNGT 4 cut(s) 163, 259, 652, 672
HpyCH4IV ACGT 1 cut(s) 539
HpyCH4V TGCA 9 cut(s) 76, 83, 185, 239, 371, 382, 438, 501, 675
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 614, 664
HpySE526I ACGT 1 cut(s) 539
Hsp92II CATG 3 cut(s) 438, 631, 662
HspAI GCGC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 5 cut(s) 97, 109, 115, 392, 409
LguI GCTCTTC 1 cut(s) 131
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 5 cut(s) 206, 380, 488, 510, 684
MaeI CTAG 4 cut(s) 143, 156, 527, 590
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 2 cut(s) 576, 703
MalI GATC 5 cut(s) 99, 111, 117, 394, 411
MboI GATC 5 cut(s) 97, 109, 115, 392, 409
MboII GAAGA 4 cut(s) 148, 216, 387, 402
MflI RGATCY 2 cut(s) 115, 392
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 4 cut(s) 78, 423, 441, 513
MmeI TCCRAC 2 cut(s) 288, 550
MnlI CCTC 6 cut(s) 310, 322, 530, 538, 541, 707
Mph1103I ATGCAT 1 cut(s) 503
MroXI GAANNNNTTC 1 cut(s) 394
MseI TTAA 2 cut(s) 338, 733
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 3 cut(s) 279, 495, 688
MvaI CCWGG 2 cut(s) 495, 688
MwoI GCNNNNNNNGC 3 cut(s) 152, 614, 664
NciI CCSGG 1 cut(s) 279
NdeII GATC 5 cut(s) 97, 109, 115, 392, 409
NlaIII CATG 3 cut(s) 438, 631, 662
NlaIV GGNNCC 2 cut(s) 249, 333
NsiI ATGCAT 1 cut(s) 503
NspI RCATGY 1 cut(s) 438
PaeI GCATGC 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 2 cut(s) 681, 717
PkrI GCNGC 1 cut(s) 85
PmaCI CACGTG 1 cut(s) 540
PmlI CACGTG 1 cut(s) 540
Ppu21I YACGTR 1 cut(s) 540
Psp6I CCWGG 2 cut(s) 493, 686
PspCI CACGTG 1 cut(s) 540
PspGI CCWGG 2 cut(s) 493, 686
PspN4I GGNNCC 2 cut(s) 249, 333
PspPI GGNCC 2 cut(s) 342, 607
PsuI RGATCY 2 cut(s) 115, 392
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 338, 733
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 5 cut(s) 97, 109, 115, 392, 409
Sau96I GGNCC 2 cut(s) 342, 607
ScrFI CCNGG 3 cut(s) 279, 495, 688
SduI GDGCHC 1 cut(s) 589
SfaNI GCATC 5 cut(s) 206, 380, 488, 510, 684
SfcI CTRYAG 2 cut(s) 468, 668
SmlI CTYRAG 2 cut(s) 201, 301
SmoI CTYRAG 2 cut(s) 201, 301
SphI GCATGC 1 cut(s) 438
Sse9I AATT 4 cut(s) 78, 423, 441, 513
SspMI CTAG 4 cut(s) 143, 156, 527, 590
StyD4I CCNGG 3 cut(s) 277, 493, 686
TaaI ACNGT 4 cut(s) 163, 259, 652, 672
TaiI ACGT 1 cut(s) 542
TaqI TCGA 1 cut(s) 447
TasI AATT 4 cut(s) 78, 423, 441, 513
TatI WGTACW 1 cut(s) 158
TfiI GAWTC 2 cut(s) 681, 717
Tru1I TTAA 2 cut(s) 338, 733
Tru9I TTAA 2 cut(s) 338, 733
TscAI CASTG 2 cut(s) 223, 677
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 35, 709
TspGWI ACGGA 1 cut(s) 512
TspRI CASTG 2 cut(s) 223, 677
XbaI TCTAGA 2 cut(s) 526, 589
XceI RCATGY 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 4 cut(s) 143, 156, 527, 590
Zsp2I ATGCAT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.