snRNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0336851 |
| rosa_laevigata | RLG00000029330 |
| rosa_roxburghii | Rroxscaffold_4G00315300 |
| rosa_rugosa | Rorug01G0128300 |
| rosa_samantha | Rh1AG149100 Rh1BG117200 Rh1DG156400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 165 |
| AcsI | RAATTY | 2 cut(s) | 148, 205 |
| AcuI | CTGAAG | 1 cut(s) | 51 |
| AfaI | GTAC | 1 cut(s) | 183 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 174 |
| AgsI | TTSAA | 1 cut(s) | 65 |
| AjnI | CCWGG | 1 cut(s) | 190 |
| Alw21I | GWGCWC | 1 cut(s) | 190 |
| AoxI | GGCC | 2 cut(s) | 68, 165 |
| ApeKI | GCWGC | 1 cut(s) | 80 |
| ApoI | RAATTY | 2 cut(s) | 148, 205 |
| BalI | TGGCCA | 1 cut(s) | 167 |
| Bbv12I | GWGCWC | 1 cut(s) | 190 |
| BbvI | GCAGC | 1 cut(s) | 92 |
| BciT130I | CCWGG | 1 cut(s) | 192 |
| BisI | GCNGC | 1 cut(s) | 81 |
| BlsI | GCNGC | 1 cut(s) | 82 |
| Bme1390I | CCNGG | 1 cut(s) | 192 |
| BmrFI | CCNGG | 1 cut(s) | 192 |
| BmsI | GCATC | 2 cut(s) | 77, 120 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 174 |
| Bse118I | RCCGGY | 1 cut(s) | 48 |
| BseBI | CCWGG | 1 cut(s) | 192 |
| BseGI | GGATG | 2 cut(s) | 92, 109 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BseXI | GCAGC | 1 cut(s) | 92 |
| BshFI | GGCC | 2 cut(s) | 70, 167 |
| BsiHKAI | GWGCWC | 1 cut(s) | 190 |
| BsiSI | CCGG | 1 cut(s) | 49 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BsnI | GGCC | 2 cut(s) | 70, 167 |
| Bsp1286I | GDGCHC | 1 cut(s) | 190 |
| Bsp143I | GATC | 1 cut(s) | 210 |
| BspANI | GGCC | 2 cut(s) | 70, 167 |
| BsrFI | RCCGGY | 1 cut(s) | 48 |
| BssAI | RCCGGY | 1 cut(s) | 48 |
| BssMI | GATC | 1 cut(s) | 210 |
| Bst2UI | CCWGG | 1 cut(s) | 192 |
| Bst6I | CTCTTC | 1 cut(s) | 27 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstF5I | GGATG | 2 cut(s) | 92, 109 |
| BstKTI | GATC | 1 cut(s) | 213 |
| BstMBI | GATC | 1 cut(s) | 210 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 26 |
| BstNI | CCWGG | 1 cut(s) | 192 |
| BstNSI | RCATGY | 1 cut(s) | 56 |
| BstSCI | CCNGG | 1 cut(s) | 190 |
| BstV1I | GCAGC | 1 cut(s) | 92 |
| BsuRI | GGCC | 2 cut(s) | 70, 167 |
| BtsCI | GGATG | 2 cut(s) | 92, 109 |
| Cfr10I | RCCGGY | 1 cut(s) | 48 |
| CsiI | ACCWGGT | 1 cut(s) | 190 |
| Csp6I | GTAC | 1 cut(s) | 182 |
| CviAII | CATG | 2 cut(s) | 53, 121 |
| CviJI | RGCY | 2 cut(s) | 70, 167 |
| CviKI_1 | RGCY | 2 cut(s) | 70, 167 |
| CviQI | GTAC | 1 cut(s) | 182 |
| DpnI | GATC | 1 cut(s) | 212 |
| DpnII | GATC | 1 cut(s) | 210 |
| EaeI | YGGCCR | 1 cut(s) | 165 |
| Eam1104I | CTCTTC | 1 cut(s) | 27 |
| EarI | CTCTTC | 1 cut(s) | 27 |
| Eco57I | CTGAAG | 1 cut(s) | 51 |
| EcoRII | CCWGG | 1 cut(s) | 190 |
| FaeI | CATG | 2 cut(s) | 56, 124 |
| FaiI | YATR | 6 cut(s) | 22, 54, 122, 141, 143, 173 |
| FatI | CATG | 2 cut(s) | 52, 120 |
| FauNDI | CATATG | 1 cut(s) | 141 |
| Fnu4HI | GCNGC | 1 cut(s) | 81 |
| FokI | GGATG | 2 cut(s) | 99, 116 |
| Fsp4HI | GCNGC | 1 cut(s) | 81 |
| GluI | GCNGC | 1 cut(s) | 81 |
| HaeIII | GGCC | 2 cut(s) | 70, 167 |
| HapII | CCGG | 1 cut(s) | 49 |
| Hin1II | CATG | 2 cut(s) | 56, 124 |
| HpaII | CCGG | 1 cut(s) | 49 |
| Hpy188I | TCNGA | 1 cut(s) | 103 |
| Hpy188III | TCNNGA | 1 cut(s) | 156 |
| HpyCH4V | TGCA | 2 cut(s) | 201, 228 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 26 |
| Hsp92II | CATG | 2 cut(s) | 56, 124 |
| Kzo9I | GATC | 1 cut(s) | 210 |
| LpnPI | CCDG | 7 cut(s) | 62, 69, 99, 119, 141, 177, 204 |
| Lsp1109I | GCAGC | 1 cut(s) | 92 |
| LweI | GCATC | 2 cut(s) | 77, 120 |
| MabI | ACCWGGT | 1 cut(s) | 190 |
| MaeIII | GTNAC | 1 cut(s) | 214 |
| MalI | GATC | 1 cut(s) | 212 |
| MboI | GATC | 1 cut(s) | 210 |
| MboII | GAAGA | 2 cut(s) | 44, 67 |
| MhlI | GDGCHC | 1 cut(s) | 190 |
| MlsI | TGGCCA | 1 cut(s) | 167 |
| MluCI | AATT | 3 cut(s) | 148, 205, 229 |
| MluNI | TGGCCA | 1 cut(s) | 167 |
| MmeI | TCCRAC | 2 cut(s) | 81, 105 |
| Mox20I | TGGCCA | 1 cut(s) | 167 |
| MscI | TGGCCA | 1 cut(s) | 167 |
| Msp20I | TGGCCA | 1 cut(s) | 167 |
| MspI | CCGG | 1 cut(s) | 49 |
| MspR9I | CCNGG | 1 cut(s) | 192 |
| MvaI | CCWGG | 1 cut(s) | 192 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 26 |
| NdeI | CATATG | 1 cut(s) | 141 |
| NdeII | GATC | 1 cut(s) | 210 |
| NlaIII | CATG | 2 cut(s) | 56, 124 |
| NmuCI | GTSAC | 1 cut(s) | 214 |
| NspI | RCATGY | 1 cut(s) | 56 |
| PkrI | GCNGC | 1 cut(s) | 82 |
| Psp6I | CCWGG | 1 cut(s) | 190 |
| PspGI | CCWGG | 1 cut(s) | 190 |
| RsaI | GTAC | 1 cut(s) | 183 |
| RsaNI | GTAC | 1 cut(s) | 182 |
| SatI | GCNGC | 1 cut(s) | 81 |
| Sau3AI | GATC | 1 cut(s) | 210 |
| ScrFI | CCNGG | 1 cut(s) | 192 |
| SduI | GDGCHC | 1 cut(s) | 190 |
| SetI | ASST | 2 cut(s) | 179, 196 |
| SexAI | ACCWGGT | 1 cut(s) | 190 |
| SfaNI | GCATC | 2 cut(s) | 77, 120 |
| Sse9I | AATT | 3 cut(s) | 148, 205, 229 |
| StyD4I | CCNGG | 1 cut(s) | 190 |
| TasI | AATT | 3 cut(s) | 148, 205, 229 |
| TseFI | GTSAC | 1 cut(s) | 214 |
| TseI | GCWGC | 1 cut(s) | 80 |
| Tsp45I | GTSAC | 1 cut(s) | 214 |
| TspDTI | ATGAA | 2 cut(s) | 128, 161 |
| XapI | RAATTY | 2 cut(s) | 148, 205 |
| XceI | RCATGY | 1 cut(s) | 56 |