Rh1AG149100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0019845
Physical Location & Seq
Reverse (-)
28101605 .. 28102003
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG149100.1

Sequence Viewer

Length: 399 bp
ATGTTGTCTATTTCTTGGGCATATTTTGCTGAAGAGAGTTTTGAGAACCGGCATGTGAAAGTTCAAAGGCTGATTTCATGTTGGAGATGCTGGTGTCATGTTGGAGATGCTGATTCATATGATGAATTTGTCAGGAACATTGGCCACTATAAGGTCGGTACGAGCACCAGGTCTTTGCAAAAATTTGATCGTCACATTCTGTTGCAATTTTTAGACTATCAGTTTTCTTATGGACAAGATTACGTTGCAGGATGTGCTATTTGGTTGCAGAGGAGAATTATCAGTTTCCAATGCTGGTTTCCTTCTCAAAGCTGGTTACAGATCAACAAACCTGGTTTTCCAAGCAGTGTAATTGGATCATACATCCTAGGTTGTGTTTTGTTTTTCAGTAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.57

Weight (kDa)

8.56

Isoelectric Point (pI)

69.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019845)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0336851
rosa_laevigata RLG00000029330
rosa_roxburghii Rroxscaffold_4G00315300
rosa_rugosa Rorug01G0128300
rosa_samantha Rh1AG149100 Rh1BG117200 Rh1DG156400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 364
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 3 cut(s) 125, 182, 393
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 2 cut(s) 167, 331
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw21I GWGCWC 1 cut(s) 167
AlwI GGATC 1 cut(s) 364
AoxI GGCC 1 cut(s) 142
ApoI RAATTY 3 cut(s) 125, 182, 393
AspA2I CCTAGG 1 cut(s) 367
AvrII CCTAGG 1 cut(s) 367
BalI TGGCCA 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 167
BciT130I CCWGG 2 cut(s) 169, 333
BfaI CTAG 1 cut(s) 368
BlnI CCTAGG 1 cut(s) 367
Bme1390I CCNGG 2 cut(s) 169, 333
BmrFI CCNGG 2 cut(s) 169, 333
BmsI GCATC 2 cut(s) 77, 97
BsaJI CCNNGG 1 cut(s) 367
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 48
BseBI CCWGG 2 cut(s) 169, 333
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 257, 363
BseLI CCNNNNNNNGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 286
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 151
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 3 cut(s) 187, 321, 356
BspANI GGCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 364
BsrFI RCCGGY 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 3 cut(s) 187, 321, 356
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 2 cut(s) 169, 333
Bst6I CTCTTC 1 cut(s) 27
BstAPI GCANNNNNTGC 2 cut(s) 26, 254
BstF5I GGATG 2 cut(s) 257, 363
BstKTI GATC 3 cut(s) 190, 324, 359
BstMBI GATC 3 cut(s) 187, 321, 356
BstMWI GCNNNNNNNGC 2 cut(s) 26, 254
BstNI CCWGG 2 cut(s) 169, 333
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 167, 331
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 2 cut(s) 257, 363
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 48
CsiI ACCWGGT 2 cut(s) 167, 331
Csp6I GTAC 1 cut(s) 159
CviAII CATG 3 cut(s) 53, 78, 98
CviJI RGCY 3 cut(s) 70, 144, 312
CviKI_1 RGCY 3 cut(s) 70, 144, 312
CviQI GTAC 1 cut(s) 159
DpnI GATC 3 cut(s) 189, 323, 358
DpnII GATC 3 cut(s) 187, 321, 356
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 167, 331
EcoT14I CCWWGG 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 3 cut(s) 56, 81, 101
FaiI YATR 9 cut(s) 22, 54, 79, 99, 118, 120, 150, 231, 361
FatI CATG 3 cut(s) 52, 77, 97
FauNDI CATATG 1 cut(s) 118
FokI GGATG 2 cut(s) 264, 350
FspBI CTAG 1 cut(s) 368
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 49
Hin1II CATG 3 cut(s) 56, 81, 101
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 312
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 178, 205, 248, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 254
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 3 cut(s) 56, 81, 101
Kzo9I GATC 3 cut(s) 187, 321, 356
LweI GCATC 2 cut(s) 77, 97
MabI ACCWGGT 2 cut(s) 167, 331
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 191, 315
MalI GATC 3 cut(s) 189, 323, 358
MboI GATC 3 cut(s) 187, 321, 356
MboII GAAGA 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 6 cut(s) 125, 182, 206, 276, 351, 393
MluNI TGGCCA 1 cut(s) 144
MmeI TCCRAC 2 cut(s) 62, 82
MnlI CCTC 1 cut(s) 264
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 1 cut(s) 397
Msp20I TGGCCA 1 cut(s) 144
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 169, 333
MvaI CCWGG 2 cut(s) 169, 333
MwoI GCNNNNNNNGC 2 cut(s) 26, 254
NdeI CATATG 1 cut(s) 118
NdeII GATC 3 cut(s) 187, 321, 356
NlaIII CATG 3 cut(s) 56, 81, 101
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 1 cut(s) 56
PfeI GAWTC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 167, 331
PspGI CCWGG 2 cut(s) 167, 331
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 397
Sau3AI GATC 3 cut(s) 187, 321, 356
ScrFI CCNGG 2 cut(s) 169, 333
SduI GDGCHC 1 cut(s) 167
SetI ASST 6 cut(s) 156, 173, 246, 314, 334, 373
SexAI ACCWGGT 2 cut(s) 167, 331
SfaNI GCATC 2 cut(s) 77, 97
Sse9I AATT 6 cut(s) 125, 182, 206, 276, 351, 393
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 167, 331
StyI CCWWGG 1 cut(s) 367
TaiI ACGT 1 cut(s) 246
TasI AATT 6 cut(s) 125, 182, 206, 276, 351, 393
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 397
Tru9I TTAA 1 cut(s) 397
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 66, 105, 138
TspRI CASTG 1 cut(s) 352
XapI RAATTY 3 cut(s) 125, 182, 393
XceI RCATGY 1 cut(s) 56
XmaJI CCTAGG 1 cut(s) 367
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.