Rroxscaffold_4G00315300

snRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0019845
Physical Location & Seq
Forward (+)
39570720 .. 39571590
871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315300.1

Sequence Viewer

Length: 492 bp
ATGGAAAGGAACTCAGCCACATGCTTGATGGAATGCAGCATCGATCTGGAGAAGGCCTTGCGCTCCAGAAACCAGTATGTATGCTCCCTCAAAGCCATATCATCAAATAATTTCAGAACAAGGCCACAGCCTCCTGGTGTACCACATGTTCGACTAATTAATGGTGTGGACATGCTCTTCTGTAGTGCCATCATCTTTGGCAGTGCATTGAAATCTGGAGATAAGGATGCAAAGGCTAGTTTTGAGAACCGGCATGTGAAAGTTCAAAGTTCAAAGTTCAAAGGCCATTCTTTGCAGCAGGATGCTTTGCCTTGTCGGATGACTTTGCAGGTGTCATGTTGGAGATGCTGGTCATATGATGAATTTGTCAGGAACATTGCCCCCTGTAAGGATGTGCTATTTGGTTGCAGAGGAGAATTATCAGTTTCCAATGCTGGTTTCCTTCTCAAAGCTGGTTACAGATCAACAAGCCTGGTTTTCCAAGCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.19

Weight (kDa)

9.28

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019845)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0336851
rosa_laevigata RLG00000029330
rosa_roxburghii Rroxscaffold_4G00315300
rosa_rugosa Rorug01G0128300
rosa_samantha Rh1AG149100 Rh1BG117200 Rh1DG156400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 319
AcsI RAATTY 1 cut(s) 362
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 388
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 4 cut(s) 211, 266, 273, 280
AjnI CCWGG 2 cut(s) 133, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
AoxI GGCC 3 cut(s) 54, 122, 283
ApeKI GCWGC 2 cut(s) 36, 295
ApoI RAATTY 1 cut(s) 362
AseI ATTAAT 1 cut(s) 159
AspLEI GCGC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 48, 307
BccI CCATC 2 cut(s) 22, 197
BciT130I CCWGG 2 cut(s) 135, 473
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 181
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 2 cut(s) 37, 296
BlsI GCNGC 2 cut(s) 38, 297
Bme1390I CCNGG 2 cut(s) 135, 473
BmrFI CCNGG 2 cut(s) 135, 473
BmsI GCATC 4 cut(s) 48, 217, 292, 335
BpmI CTGGAG 3 cut(s) 49, 68, 237
Bsa29I ATCGAT 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 2 cut(s) 135, 473
BseCI ATCGAT 1 cut(s) 42
BseGI GGATG 4 cut(s) 232, 307, 324, 397
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 2 cut(s) 48, 307
BshFI GGCC 3 cut(s) 56, 124, 285
BshVI ATCGAT 1 cut(s) 42
BsiSI CCGG 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 388
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 3 cut(s) 56, 124, 285
Bsp143I GATC 2 cut(s) 43, 461
BspANI GGCC 3 cut(s) 56, 124, 285
BspCNI CTCAG 1 cut(s) 26
BspDI ATCGAT 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 319
BspQI GCTCTTC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 249
BsrI ACTGG 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 249
BssMI GATC 2 cut(s) 43, 461
Bst2UI CCWGG 2 cut(s) 135, 473
Bst6I CTCTTC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 13
BstF5I GGATG 4 cut(s) 232, 307, 324, 397
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 46, 464
BstMBI GATC 2 cut(s) 43, 461
BstNI CCWGG 2 cut(s) 135, 473
BstNSI RCATGY 4 cut(s) 24, 149, 175, 257
BstSCI CCNGG 2 cut(s) 133, 471
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 48, 307
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 3 cut(s) 56, 124, 285
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 4 cut(s) 232, 307, 324, 397
BtsI GCAGTG 2 cut(s) 208, 492
BtsIMutI CAGTG 2 cut(s) 208, 492
BveI ACCTGC 1 cut(s) 319
CfoI GCGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 249
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 140
CviAII CATG 5 cut(s) 21, 146, 172, 254, 336
CviJI RGCY 9 cut(s) 17, 56, 95, 124, 130, 236, 285, 452, 471
CviKI_1 RGCY 9 cut(s) 17, 56, 95, 124, 130, 236, 285, 452, 471
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 13
DpnI GATC 2 cut(s) 45, 463
DpnII GATC 2 cut(s) 43, 461
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco147I AGGCCT 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 133, 471
FaeI CATG 5 cut(s) 24, 149, 175, 257, 339
FatI CATG 5 cut(s) 20, 145, 171, 253, 335
FauNDI CATATG 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 37, 296
FokI GGATG 4 cut(s) 239, 314, 331, 404
Fsp4HI GCNGC 2 cut(s) 37, 296
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 62
GluI GCNGC 2 cut(s) 37, 296
GsuI CTGGAG 3 cut(s) 49, 68, 237
HaeIII GGCC 3 cut(s) 56, 124, 285
HapII CCGG 1 cut(s) 250
HhaI GCGC 1 cut(s) 63
Hin1II CATG 5 cut(s) 24, 149, 175, 257, 339
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HpaII CCGG 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 140, 169
Hpy188I TCNGA 2 cut(s) 116, 318
Hpy188III TCNNGA 4 cut(s) 47, 66, 216, 370
Hpy8I GTNNAC 2 cut(s) 140, 169
HpyAV CCTTC 2 cut(s) 46, 452
HpyCH4V TGCA 6 cut(s) 36, 206, 230, 295, 328, 408
HpyF3I CTNAG 1 cut(s) 13
Hsp92II CATG 5 cut(s) 24, 149, 175, 257, 339
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 43, 461
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 68, 89
Lsp1109I GCAGC 2 cut(s) 48, 307
LweI GCATC 4 cut(s) 48, 217, 292, 335
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 455
MalI GATC 2 cut(s) 45, 463
MboI GATC 2 cut(s) 43, 461
MboII GAAGA 1 cut(s) 169
MluCI AATT 4 cut(s) 109, 156, 362, 416
MmeI TCCRAC 2 cut(s) 296, 320
MnlI CCTC 3 cut(s) 98, 141, 404
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 2 cut(s) 135, 473
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 2 cut(s) 135, 473
NdeI CATATG 1 cut(s) 355
NdeII GATC 2 cut(s) 43, 461
NlaIII CATG 5 cut(s) 24, 149, 175, 257, 339
NspI RCATGY 4 cut(s) 24, 149, 175, 257
PaqCI CACCTGC 1 cut(s) 319
PceI AGGCCT 1 cut(s) 56
PciI ACATGT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 182
PctI GAATGC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 38, 297
PscI ACATGT 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 133, 471
PspGI CCWGG 2 cut(s) 133, 471
PsrI GAACNNNNNNTAC 2 cut(s) 132, 164
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 37, 296
Sau3AI GATC 2 cut(s) 43, 461
ScrFI CCNGG 2 cut(s) 135, 473
SetI ASST 2 cut(s) 333, 454
SfaNI GCATC 4 cut(s) 48, 217, 292, 335
SfcI CTRYAG 1 cut(s) 181
Sse9I AATT 4 cut(s) 109, 156, 362, 416
SseBI AGGCCT 1 cut(s) 56
SspMI CTAG 1 cut(s) 237
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 133, 471
TaqI TCGA 2 cut(s) 42, 151
TasI AATT 4 cut(s) 109, 156, 362, 416
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 208, 492
TseI GCWGC 2 cut(s) 36, 295
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 2 cut(s) 208, 492
VspI ATTAAT 1 cut(s) 159
XapI RAATTY 1 cut(s) 362
XceI RCATGY 4 cut(s) 24, 149, 175, 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.