RLG00000029330

snRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019845
Physical Location & Seq
Forward (+)
36617907 .. 36618581
675 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029330

Sequence Viewer

Length: 342 bp
ATGGAATGCAGCATAGATCTGGAGAAGGCCCTGCGCTCCAGAAACCAGTATGTATGCTCCCTTAAAGTCATATCATCAAATAATTTCAGAACAAGGCCACAGCCTCCTGAGAGTTTTGACAACCGGCATGTGAAAGTTCAAAGGCCATTCTTCTCAGCAGGATGCTTTGCCTTGTCGGATGACTTTGCTGGTGTCATGTTGGAGATGCTGGTTCATATGATGAATTTGTCAGGAACATTGGCCACTACAAGGTCGTTGCAGAGGAGAATTATCAGTTTCAGTGCCGGTTTCCTTCTCAAAGCTGGTTACAGATCAACAACCCTGGTTTTCCAAGCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.76

Weight (kDa)

9.81

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019845)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0336851
rosa_laevigata RLG00000029330
rosa_roxburghii Rroxscaffold_4G00315300
rosa_rugosa Rorug01G0128300
rosa_samantha Rh1AG149100 Rh1BG117200 Rh1DG156400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
AoxI GGCC 4 cut(s) 27, 95, 143, 240
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 223
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 242
BbvI GCAGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 323
BglII AGATCT 1 cut(s) 16
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 152, 195
BpmI CTGGAG 2 cut(s) 22, 41
BsaJI CCNNGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse118I RCCGGY 2 cut(s) 123, 284
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 2 cut(s) 167, 184
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 99, 168
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 21
BshFI GGCC 4 cut(s) 29, 97, 145, 242
BsiSI CCGG 2 cut(s) 124, 285
BslI CCNNNNNNNGG 1 cut(s) 249
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 4 cut(s) 29, 97, 145, 242
Bsp143I GATC 2 cut(s) 16, 311
BspANI GGCC 4 cut(s) 29, 97, 145, 242
BspCNI CTCAG 2 cut(s) 100, 167
BsrFI RCCGGY 2 cut(s) 123, 284
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 2 cut(s) 123, 284
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 2 cut(s) 16, 311
Bst2UI CCWGG 1 cut(s) 323
BstDEI CTNAG 2 cut(s) 108, 154
BstF5I GGATG 2 cut(s) 167, 184
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 2 cut(s) 19, 314
BstMBI GATC 2 cut(s) 16, 311
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 4 cut(s) 29, 97, 145, 242
BtsCI GGATG 2 cut(s) 167, 184
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 286, 342
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 2 cut(s) 123, 284
Cfr13I GGNCC 1 cut(s) 28
CviAII CATG 2 cut(s) 128, 196
CviJI RGCY 6 cut(s) 29, 97, 103, 145, 242, 302
CviKI_1 RGCY 6 cut(s) 29, 97, 103, 145, 242, 302
DdeI CTNAG 2 cut(s) 108, 154
DpnI GATC 2 cut(s) 18, 313
DpnII GATC 2 cut(s) 16, 311
EaeI YGGCCR 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 321
FaeI CATG 2 cut(s) 131, 199
FaiI YATR 8 cut(s) 14, 51, 55, 71, 129, 197, 216, 218
FatI CATG 2 cut(s) 127, 195
FauNDI CATATG 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 2 cut(s) 174, 191
Fsp4HI GCNGC 1 cut(s) 10
GlaI GCGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 10
GsuI CTGGAG 2 cut(s) 22, 41
HaeIII GGCC 4 cut(s) 29, 97, 145, 242
HapII CCGG 2 cut(s) 124, 285
HhaI GCGC 1 cut(s) 36
Hin1II CATG 2 cut(s) 131, 199
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HpaII CCGG 2 cut(s) 124, 285
Hpy188I TCNGA 2 cut(s) 89, 178
Hpy188III TCNNGA 4 cut(s) 20, 39, 107, 231
HpyAV CCTTC 2 cut(s) 19, 302
HpyCH4V TGCA 2 cut(s) 9, 259
HpyF3I CTNAG 2 cut(s) 108, 154
Hsp92II CATG 2 cut(s) 131, 199
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 2 cut(s) 16, 311
LmnI GCTCC 2 cut(s) 41, 62
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 2 cut(s) 152, 195
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 18, 313
MboI GATC 2 cut(s) 16, 311
MboII GAAGA 1 cut(s) 142
MflI RGATCY 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 3 cut(s) 82, 223, 267
MluNI TGGCCA 1 cut(s) 242
MmeI TCCRAC 2 cut(s) 156, 180
MnlI CCTC 2 cut(s) 114, 255
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 1 cut(s) 63
Msp20I TGGCCA 1 cut(s) 242
MspI CCGG 2 cut(s) 124, 285
MspR9I CCNGG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 1 cut(s) 323
NdeI CATATG 1 cut(s) 216
NdeII GATC 2 cut(s) 16, 311
NlaIII CATG 2 cut(s) 131, 199
NspI RCATGY 1 cut(s) 131
PctI GAATGC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspPI GGNCC 1 cut(s) 28
PsuI RGATCY 1 cut(s) 16
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 16, 311
Sau96I GGNCC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 323
SetI ASST 2 cut(s) 254, 304
SfaNI GCATC 2 cut(s) 152, 195
Sse9I AATT 3 cut(s) 82, 223, 267
StyD4I CCNGG 1 cut(s) 321
TasI AATT 3 cut(s) 82, 223, 267
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 286, 342
TseI GCWGC 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 203, 236
TspRI CASTG 2 cut(s) 286, 342
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.