snRNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0336851 |
| rosa_laevigata | RLG00000029330 |
| rosa_roxburghii | Rroxscaffold_4G00315300 |
| rosa_rugosa | Rorug01G0128300 |
| rosa_samantha | Rh1AG149100 Rh1BG117200 Rh1DG156400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 768 |
| AclWI | GGATC | 7 cut(s) | 405, 587, 600, 733, 746, 789, 890 |
| AcsI | RAATTY | 1 cut(s) | 604 |
| AcuI | CTGAAG | 2 cut(s) | 198, 216 |
| AfaI | GTAC | 2 cut(s) | 647, 675 |
| AgsI | TTSAA | 6 cut(s) | 146, 356, 367, 518, 652, 893 |
| AjnI | CCWGG | 2 cut(s) | 482, 816 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 519, 551 |
| AlwI | GGATC | 7 cut(s) | 405, 587, 600, 733, 746, 789, 890 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 295, 722 |
| ApeKI | GCWGC | 3 cut(s) | 185, 407, 719 |
| ApoI | RAATTY | 1 cut(s) | 604 |
| AsuC2I | CCSGG | 1 cut(s) | 900 |
| AsuHPI | GGTGA | 1 cut(s) | 995 |
| BamHI | GGATCC | 2 cut(s) | 592, 738 |
| BbsI | GAAGAC | 1 cut(s) | 353 |
| BbvCI | CCTCAGC | 1 cut(s) | 189 |
| BbvI | GCAGC | 3 cut(s) | 197, 419, 706 |
| BccI | CCATC | 1 cut(s) | 692 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 746, 780 |
| BciT130I | CCWGG | 2 cut(s) | 484, 818 |
| BciVI | GTATCC | 1 cut(s) | 142 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BcnI | CCSGG | 1 cut(s) | 900 |
| BfaI | CTAG | 1 cut(s) | 413 |
| BfmI | CTRYAG | 3 cut(s) | 19, 57, 793 |
| BfuI | GTATCC | 1 cut(s) | 142 |
| BisI | GCNGC | 3 cut(s) | 186, 408, 720 |
| BlsI | GCNGC | 3 cut(s) | 187, 409, 721 |
| Bme1390I | CCNGG | 3 cut(s) | 484, 818, 900 |
| BmiI | GGNNCC | 3 cut(s) | 586, 594, 740 |
| BmrFI | CCNGG | 3 cut(s) | 484, 818, 900 |
| BmsI | GCATC | 2 cut(s) | 224, 877 |
| BpiI | GAAGAC | 1 cut(s) | 353 |
| BpmI | CTGGAG | 1 cut(s) | 15 |
| Bpu10I | CCTNAGC | 1 cut(s) | 189 |
| BpuEI | CTTGAG | 2 cut(s) | 549, 840 |
| BpuMI | CCSGG | 1 cut(s) | 900 |
| BsaJI | CCNNGG | 5 cut(s) | 482, 483, 495, 588, 742 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 8, 38, 738, 768 |
| Bse1I | ACTGG | 3 cut(s) | 32, 84, 508 |
| BseBI | CCWGG | 2 cut(s) | 484, 818 |
| BseDI | CCNNGG | 5 cut(s) | 482, 483, 495, 588, 742 |
| BseMII | CTCAG | 4 cut(s) | 180, 567, 936, 951 |
| BseNI | ACTGG | 3 cut(s) | 32, 84, 508 |
| BseRI | GAGGAG | 1 cut(s) | 16 |
| BseXI | GCAGC | 3 cut(s) | 197, 419, 706 |
| BsgI | GTGCAG | 1 cut(s) | 926 |
| Bsh1236I | CGCG | 1 cut(s) | 768 |
| BsiSI | CCGG | 1 cut(s) | 900 |
| BslFI | GGGAC | 1 cut(s) | 963 |
| BsmFI | GGGAC | 1 cut(s) | 963 |
| BsmI | GAATGC | 1 cut(s) | 627 |
| Bsp143I | GATC | 6 cut(s) | 334, 397, 592, 738, 781, 895 |
| Bsp19I | CCATGG | 2 cut(s) | 495, 588 |
| Bsp68I | TCGCGA | 1 cut(s) | 768 |
| BspCNI | CTCAG | 4 cut(s) | 181, 568, 937, 952 |
| BspFNI | CGCG | 1 cut(s) | 768 |
| BspLI | GGNNCC | 3 cut(s) | 586, 594, 740 |
| BspPI | GGATC | 7 cut(s) | 405, 587, 600, 733, 746, 789, 890 |
| BspQI | GCTCTTC | 1 cut(s) | 432 |
| BsrI | ACTGG | 3 cut(s) | 32, 84, 508 |
| BssECI | CCNNGG | 5 cut(s) | 482, 483, 495, 588, 742 |
| BssMI | GATC | 6 cut(s) | 334, 397, 592, 738, 781, 895 |
| BssT1I | CCWWGG | 3 cut(s) | 495, 588, 742 |
| Bst2UI | CCWGG | 2 cut(s) | 484, 818 |
| Bst4CI | ACNGT | 2 cut(s) | 352, 877 |
| Bst6I | CTCTTC | 1 cut(s) | 432 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 221 |
| BstC8I | GCNNGC | 1 cut(s) | 627 |
| BstDEI | CTNAG | 4 cut(s) | 189, 576, 945, 960 |
| BstDSI | CCRYGG | 2 cut(s) | 495, 588 |
| BstFNI | CGCG | 1 cut(s) | 768 |
| BstKTI | GATC | 6 cut(s) | 337, 400, 595, 741, 784, 898 |
| BstMBI | GATC | 6 cut(s) | 334, 397, 592, 738, 781, 895 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 182, 191, 221, 774 |
| BstNI | CCWGG | 2 cut(s) | 484, 818 |
| BstSCI | CCNGG | 3 cut(s) | 482, 816, 898 |
| BstSFI | CTRYAG | 3 cut(s) | 19, 57, 793 |
| BstUI | CGCG | 1 cut(s) | 768 |
| BstV1I | GCAGC | 3 cut(s) | 197, 419, 706 |
| BstV2I | GAAGAC | 1 cut(s) | 353 |
| BstX2I | RGATCY | 5 cut(s) | 397, 592, 738, 781, 895 |
| BstYI | RGATCY | 5 cut(s) | 397, 592, 738, 781, 895 |
| BsuI | GTATCC | 1 cut(s) | 142 |
| BtgI | CCRYGG | 2 cut(s) | 495, 588 |
| BtsIMutI | CAGTG | 1 cut(s) | 886 |
| BtuMI | TCGCGA | 1 cut(s) | 768 |
| Cac8I | GCNNGC | 1 cut(s) | 627 |
| CaiI | CAGNNNCTG | 2 cut(s) | 295, 722 |
| Csp6I | GTAC | 2 cut(s) | 646, 674 |
| CviAII | CATG | 4 cut(s) | 461, 496, 589, 787 |
| CviQI | GTAC | 2 cut(s) | 646, 674 |
| DdeI | CTNAG | 4 cut(s) | 189, 576, 945, 960 |
| DpnI | GATC | 6 cut(s) | 336, 399, 594, 740, 783, 897 |
| DpnII | GATC | 6 cut(s) | 334, 397, 592, 738, 781, 895 |
| Eam1104I | CTCTTC | 1 cut(s) | 432 |
| EarI | CTCTTC | 1 cut(s) | 432 |
| Eco130I | CCWWGG | 3 cut(s) | 495, 588, 742 |
| Eco57I | CTGAAG | 2 cut(s) | 198, 216 |
| EcoRI | GAATTC | 1 cut(s) | 604 |
| EcoRII | CCWGG | 2 cut(s) | 482, 816 |
| EcoT14I | CCWWGG | 3 cut(s) | 495, 588, 742 |
| EcoT22I | ATGCAT | 1 cut(s) | 128 |
| ErhI | CCWWGG | 3 cut(s) | 495, 588, 742 |
| FaeI | CATG | 4 cut(s) | 464, 499, 592, 790 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 144, 176 |
| FaqI | GGGAC | 1 cut(s) | 963 |
| FatI | CATG | 4 cut(s) | 460, 495, 588, 786 |
| FauNDI | CATATG | 1 cut(s) | 8 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 3 cut(s) | 186, 408, 720 |
| Fsp4HI | GCNGC | 3 cut(s) | 186, 408, 720 |
| FspBI | CTAG | 1 cut(s) | 413 |
| GluI | GCNGC | 3 cut(s) | 186, 408, 720 |
| GsuI | CTGGAG | 1 cut(s) | 15 |
| HapII | CCGG | 1 cut(s) | 900 |
| Hin1II | CATG | 4 cut(s) | 464, 499, 592, 790 |
| HindIII | AAGCTT | 1 cut(s) | 923 |
| HinfI | GANTC | 2 cut(s) | 363, 554 |
| HpaII | CCGG | 1 cut(s) | 900 |
| HphI | GGTGA | 1 cut(s) | 995 |
| Hpy188I | TCNGA | 4 cut(s) | 534, 577, 933, 946 |
| Hpy188III | TCNNGA | 4 cut(s) | 273, 736, 767, 857 |
| HpyAV | CCTTC | 3 cut(s) | 191, 350, 928 |
| HpyCH4III | ACNGT | 2 cut(s) | 352, 877 |
| HpyCH4V | TGCA | 7 cut(s) | 126, 151, 625, 757, 868, 907, 974 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 182, 191, 221, 774 |
| HpyF3I | CTNAG | 4 cut(s) | 189, 576, 945, 960 |
| Hsp92II | CATG | 4 cut(s) | 464, 499, 592, 790 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| Kzo9I | GATC | 6 cut(s) | 334, 397, 592, 738, 781, 895 |
| LguI | GCTCTTC | 1 cut(s) | 432 |
| LmnI | GCTCC | 1 cut(s) | 29 |
| Lsp1109I | GCAGC | 3 cut(s) | 197, 419, 706 |
| LweI | GCATC | 2 cut(s) | 224, 877 |
| MaeI | CTAG | 1 cut(s) | 413 |
| MaeIII | GTNAC | 2 cut(s) | 115, 499 |
| MalI | GATC | 6 cut(s) | 336, 399, 594, 740, 783, 897 |
| MboI | GATC | 6 cut(s) | 334, 397, 592, 738, 781, 895 |
| MboII | GAAGA | 7 cut(s) | 191, 261, 358, 449, 697, 707, 905 |
| MfeI | CAATTG | 2 cut(s) | 219, 429 |
| MflI | RGATCY | 5 cut(s) | 397, 592, 738, 781, 895 |
| MluCI | AATT | 7 cut(s) | 219, 339, 429, 604, 759, 798, 810 |
| MnlI | CCTC | 8 cut(s) | 37, 184, 194, 240, 388, 409, 655, 940 |
| Mph1103I | ATGCAT | 1 cut(s) | 128 |
| MseI | TTAA | 1 cut(s) | 402 |
| MspA1I | CMGCKG | 2 cut(s) | 188, 719 |
| MspI | CCGG | 1 cut(s) | 900 |
| MspR9I | CCNGG | 3 cut(s) | 484, 818, 900 |
| MunI | CAATTG | 2 cut(s) | 219, 429 |
| Mva1269I | GAATGC | 1 cut(s) | 627 |
| MvaI | CCWGG | 2 cut(s) | 484, 818 |
| MvnI | CGCG | 1 cut(s) | 768 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 182, 191, 221, 774 |
| NciI | CCSGG | 1 cut(s) | 900 |
| NcoI | CCATGG | 2 cut(s) | 495, 588 |
| NdeI | CATATG | 1 cut(s) | 8 |
| NdeII | GATC | 6 cut(s) | 334, 397, 592, 738, 781, 895 |
| NlaIII | CATG | 4 cut(s) | 464, 499, 592, 790 |
| NlaIV | GGNNCC | 3 cut(s) | 586, 594, 740 |
| NruI | TCGCGA | 1 cut(s) | 768 |
| NsiI | ATGCAT | 1 cut(s) | 128 |
| PasI | CCCWGGG | 1 cut(s) | 483 |
| PciSI | GCTCTTC | 1 cut(s) | 432 |
| PctI | GAATGC | 1 cut(s) | 627 |
| PfeI | GAWTC | 2 cut(s) | 363, 554 |
| PfoI | TCCNGGA | 1 cut(s) | 898 |
| PkrI | GCNGC | 3 cut(s) | 187, 409, 721 |
| Psp6I | CCWGG | 2 cut(s) | 482, 816 |
| PspGI | CCWGG | 2 cut(s) | 482, 816 |
| PspN4I | GGNNCC | 3 cut(s) | 586, 594, 740 |
| PstNI | CAGNNNCTG | 2 cut(s) | 295, 722 |
| PsuI | RGATCY | 5 cut(s) | 397, 592, 738, 781, 895 |
| PvuII | CAGCTG | 2 cut(s) | 188, 719 |
| RruI | TCGCGA | 1 cut(s) | 768 |
| RsaI | GTAC | 2 cut(s) | 647, 675 |
| RsaNI | GTAC | 2 cut(s) | 646, 674 |
| SapI | GCTCTTC | 1 cut(s) | 432 |
| SaqAI | TTAA | 1 cut(s) | 402 |
| SatI | GCNGC | 3 cut(s) | 186, 408, 720 |
| Sau3AI | GATC | 6 cut(s) | 334, 397, 592, 738, 781, 895 |
| ScrFI | CCNGG | 3 cut(s) | 484, 818, 900 |
| SfaNI | GCATC | 2 cut(s) | 224, 877 |
| SfcI | CTRYAG | 3 cut(s) | 19, 57, 793 |
| SmlI | CTYRAG | 2 cut(s) | 564, 855 |
| SmoI | CTYRAG | 2 cut(s) | 564, 855 |
| Sse9I | AATT | 7 cut(s) | 219, 339, 429, 604, 759, 798, 810 |
| SspMI | CTAG | 1 cut(s) | 413 |
| StyD4I | CCNGG | 3 cut(s) | 482, 816, 898 |
| StyI | CCWWGG | 3 cut(s) | 495, 588, 742 |
| TaaI | ACNGT | 2 cut(s) | 352, 877 |
| TaqI | TCGA | 4 cut(s) | 272, 393, 424, 549 |
| TasI | AATT | 7 cut(s) | 219, 339, 429, 604, 759, 798, 810 |
| TfiI | GAWTC | 2 cut(s) | 363, 554 |
| Tru1I | TTAA | 1 cut(s) | 402 |
| Tru9I | TTAA | 1 cut(s) | 402 |
| TscAI | CASTG | 1 cut(s) | 886 |
| TseI | GCWGC | 3 cut(s) | 185, 407, 719 |
| TspDTI | ATGAA | 2 cut(s) | 567, 617 |
| TspGWI | ACGGA | 1 cut(s) | 794 |
| TspRI | CASTG | 1 cut(s) | 886 |
| XapI | RAATTY | 1 cut(s) | 604 |
| XspI | CTAG | 1 cut(s) | 413 |
| Zsp2I | ATGCAT | 1 cut(s) | 128 |