Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019842

Physical Location & Seq

Genomic Coordinates Reverse (-)

30426447 .. 30451035

Gene Structure 24589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGATTGTGCCAGCAATAACTGAGCTTCTGGTTGCTCAGTTTATGTGGATGGATTATGATAACCCCTCAAAGACTATATATCTGTACATAAATTCATTTGGAACACAGGTTAGTGTTGGAATTATTAGTAACTCTAATTCAATCTACTTAATGAAGAGTGAGATACAGTTTGAAGGTTGCTTGTATCATATTCATTATTTGATAGTGCATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

71

Amino Acids

8.23

Weight (kDa)

5.76

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019842)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339141
rosa_roxburghii	Rroxscaffold_5G00370800
rosa_samantha	Rh6CG051500 Rh6CG052100 Rh6CG053500 Rh6DG049100 Rh6DG049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	91
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	141, 173
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	91
BccI	CCATC	1 cut(s)	43
BseGI	GGATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	12, 50
Bsp1407I	TGTACA	1 cut(s)	84
BspCNI	CTCAG	2 cut(s)	13, 49
BsrGI	TGTACA	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	21, 36
BstF5I	GGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	85
CviJI	RGCY	1 cut(s)	25
CviKI_1	RGCY	1 cut(s)	25
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	21, 36
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
FaiI	YATR	7 cut(s)	44, 57, 77, 79, 89, 189, 210
FokI	GGATG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	208
HpyF3I	CTNAG	2 cut(s)	21, 36
LpnPI	CCDG	3 cut(s)	14, 24, 92
MaeIII	GTNAC	1 cut(s)	128
MboII	GAAGA	1 cut(s)	166
MluCI	AATT	3 cut(s)	91, 120, 136
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	149
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	149
SetI	ASST	3 cut(s)	27, 111, 178
SgeI	CNNG	4 cut(s)	23, 41, 119, 193
Sse9I	AATT	3 cut(s)	91, 120, 136
TaaI	ACNGT	1 cut(s)	168
TasI	AATT	3 cut(s)	91, 120, 136
TatI	WGTACW	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TspDTI	ATGAA	3 cut(s)	84, 167, 182
XapI	RAATTY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.