ATP-dependent Clp protease proteolytic
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0339141 |
| rosa_roxburghii | Rroxscaffold_5G00370800 |
| rosa_samantha | Rh6CG051500 Rh6CG052100 Rh6CG053500 Rh6DG049100 Rh6DG049400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 100 |
| AdeI | CACNNNGTG | 1 cut(s) | 119 |
| AfaI | GTAC | 1 cut(s) | 95 |
| AgsI | TTSAA | 2 cut(s) | 134, 163 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 29 |
| ApoI | RAATTY | 1 cut(s) | 100 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 18, 50 |
| Bse118I | RCCGGY | 1 cut(s) | 19 |
| Bse3DI | GCAATG | 1 cut(s) | 166 |
| BseMI | GCAATG | 1 cut(s) | 166 |
| BseMII | CTCAG | 1 cut(s) | 59 |
| BsiSI | CCGG | 1 cut(s) | 20 |
| Bsp1407I | TGTACA | 1 cut(s) | 93 |
| Bsp143I | GATC | 1 cut(s) | 31 |
| BspCNI | CTCAG | 1 cut(s) | 58 |
| BsrDI | GCAATG | 1 cut(s) | 166 |
| BsrFI | RCCGGY | 1 cut(s) | 19 |
| BsrGI | TGTACA | 1 cut(s) | 93 |
| BssAI | RCCGGY | 1 cut(s) | 19 |
| BssMI | GATC | 1 cut(s) | 31 |
| BstAUI | TGTACA | 1 cut(s) | 93 |
| BstC8I | GCNNGC | 1 cut(s) | 21 |
| BstDEI | CTNAG | 1 cut(s) | 45 |
| BstKTI | GATC | 1 cut(s) | 34 |
| BstMBI | GATC | 1 cut(s) | 31 |
| Cac8I | GCNNGC | 1 cut(s) | 21 |
| CaiI | CAGNNNCTG | 1 cut(s) | 29 |
| Cfr10I | RCCGGY | 1 cut(s) | 19 |
| Csp6I | GTAC | 1 cut(s) | 94 |
| CviJI | RGCY | 1 cut(s) | 82 |
| CviKI_1 | RGCY | 1 cut(s) | 82 |
| CviQI | GTAC | 1 cut(s) | 94 |
| DdeI | CTNAG | 1 cut(s) | 45 |
| DpnI | GATC | 1 cut(s) | 33 |
| DpnII | GATC | 1 cut(s) | 31 |
| DraIII | CACNNNGTG | 1 cut(s) | 119 |
| FaiI | YATR | 6 cut(s) | 53, 66, 86, 88, 98, 150 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 155 |
| HapII | CCGG | 1 cut(s) | 20 |
| HpaII | CCGG | 1 cut(s) | 20 |
| Hpy188III | TCNNGA | 1 cut(s) | 108 |
| HpyAV | CCTTC | 1 cut(s) | 128 |
| HpyF3I | CTNAG | 1 cut(s) | 45 |
| KroI | GCCGGC | 1 cut(s) | 19 |
| KroNI | GCCGGC | 1 cut(s) | 21 |
| Kzo9I | GATC | 1 cut(s) | 31 |
| LpnPI | CCDG | 4 cut(s) | 23, 33, 93, 155 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 1 cut(s) | 33 |
| MboI | GATC | 1 cut(s) | 31 |
| MboII | GAAGA | 1 cut(s) | 26 |
| MluCI | AATT | 3 cut(s) | 12, 100, 128 |
| MmeI | TCCRAC | 1 cut(s) | 39 |
| MnlI | CCTC | 1 cut(s) | 85 |
| MroNI | GCCGGC | 1 cut(s) | 19 |
| MseI | TTAA | 1 cut(s) | 178 |
| MspI | CCGG | 1 cut(s) | 20 |
| NaeI | GCCGGC | 1 cut(s) | 21 |
| NdeII | GATC | 1 cut(s) | 31 |
| NgoMIV | GCCGGC | 1 cut(s) | 19 |
| PdiI | GCCGGC | 1 cut(s) | 21 |
| PstNI | CAGNNNCTG | 1 cut(s) | 29 |
| RsaI | GTAC | 1 cut(s) | 95 |
| RsaNI | GTAC | 1 cut(s) | 94 |
| SaqAI | TTAA | 1 cut(s) | 178 |
| Sau3AI | GATC | 1 cut(s) | 31 |
| SetI | ASST | 1 cut(s) | 139 |
| SgeI | CNNG | 5 cut(s) | 32, 50, 88, 120, 154 |
| Sse9I | AATT | 3 cut(s) | 12, 100, 128 |
| TaqI | TCGA | 1 cut(s) | 77 |
| TasI | AATT | 3 cut(s) | 12, 100, 128 |
| TatI | WGTACW | 1 cut(s) | 93 |
| Tru1I | TTAA | 1 cut(s) | 178 |
| Tru9I | TTAA | 1 cut(s) | 178 |
| TspDTI | ATGAA | 1 cut(s) | 143 |
| XapI | RAATTY | 1 cut(s) | 100 |