Rh6CG052100

ATP-dependent Clp protease proteolytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019842
Physical Location & Seq
Forward (+)
5322498 .. 5323124
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG052100.1

Sequence Viewer

Length: 372 bp
ATGGATGAAAAGGGCCCTGCAAAATATAGTATGAGTGTGAGCATGTACCGTGGTGGTGCAAGAGGATGCGGAAGAGCCCGAACTGCTCCTCCGAATTTGCCTTCTTTACTGTTGGATGCTCGGATTTGCTACTTGGGAATGCCGATTGTGCCGGTAGTAACTGATCTTCTGGTTGCTCAGTTTATGTGGTTGGATTATGATAACCCCTCGAAGCCTATATATCTGTACATAAATTCATCTGGAACACAGAATGAGAAGATGGAGAGCGTTGGATCTGAAACTGAGGCATATGCCATTGATGGCATGATGAAAGTAAGAATTATTAGTTCTGTAAGGTGGCCTATTGCATGTATTTATACTATATGCAAGTAG

Protein Analysis

123

Amino Acids

13.65

Weight (kDa)

8.35

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 35 - 83 4.2e-07 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019842)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0339141
rosa_roxburghii Rroxscaffold_5G00370800
rosa_samantha Rh6CG051500 Rh6CG052100 Rh6CG053500 Rh6DG049100 Rh6DG049400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 280
AcsI RAATTY 2 cut(s) 94, 232
AfaI GTAC 2 cut(s) 47, 227
AloI GAACNNNNNNTCC 2 cut(s) 73, 105
AlwI GGATC 1 cut(s) 280
AoxI GGCC 2 cut(s) 13, 338
ApaI GGGCCC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 94, 232
AspS9I GGNCC 2 cut(s) 13, 14
BaeGI GKGCMC 1 cut(s) 17
BanII GRGCYC 2 cut(s) 17, 79
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
BccI CCATC 2 cut(s) 253, 293
BmgT120I GGNCC 2 cut(s) 13, 14
BmiI GGNNCC 1 cut(s) 15
BmsI GCATC 2 cut(s) 56, 106
BsaJI CCNNGG 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bse118I RCCGGY 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 3 cut(s) 10, 71, 121
BseMII CTCAG 2 cut(s) 191, 273
BseRI GAGGAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 17
BshFI GGCC 2 cut(s) 15, 340
BsiSI CCGG 1 cut(s) 152
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 2 cut(s) 15, 340
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 17, 79
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 2 cut(s) 163, 272
BspACI CCGC 1 cut(s) 69
BspANI GGCC 2 cut(s) 15, 340
BspCNI CTCAG 2 cut(s) 190, 274
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 151
BsrGI TGTACA 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 2 cut(s) 163, 272
Bst4CI ACNGT 2 cut(s) 50, 111
Bst6I CTCTTC 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 225
BstDEI CTNAG 2 cut(s) 177, 282
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 3 cut(s) 10, 71, 121
BstKTI GATC 2 cut(s) 166, 275
BstMBI GATC 2 cut(s) 163, 272
BstMWI GCNNNNNNNGC 2 cut(s) 83, 148
BstNSI RCATGY 2 cut(s) 46, 351
BstSLI GKGCMC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 2 cut(s) 15, 340
BtgI CCRYGG 1 cut(s) 49
BtsCI GGATG 3 cut(s) 10, 71, 121
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 13, 14
Csp6I GTAC 2 cut(s) 46, 226
CviAII CATG 3 cut(s) 43, 304, 348
CviJI RGCY 4 cut(s) 15, 77, 214, 340
CviKI_1 RGCY 4 cut(s) 15, 77, 214, 340
CviQI GTAC 2 cut(s) 46, 226
DdeI CTNAG 2 cut(s) 177, 282
DpnI GATC 2 cut(s) 165, 274
DpnII GATC 2 cut(s) 163, 272
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco24I GRGCYC 2 cut(s) 17, 79
EcoO109I RGGNCCY 2 cut(s) 13, 14
EcoT38I GRGCYC 2 cut(s) 17, 79
FaeI CATG 3 cut(s) 46, 307, 351
FatI CATG 3 cut(s) 42, 303, 347
FauNDI CATATG 1 cut(s) 289
FokI GGATG 3 cut(s) 17, 78, 128
FriOI GRGCYC 2 cut(s) 17, 79
HaeIII GGCC 2 cut(s) 15, 340
HapII CCGG 1 cut(s) 152
Hin1II CATG 3 cut(s) 46, 307, 351
HpaII CCGG 1 cut(s) 152
Hpy188I TCNGA 3 cut(s) 93, 123, 277
Hpy188III TCNNGA 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 2 cut(s) 50, 111
HpyCH4V TGCA 4 cut(s) 20, 59, 347, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 148
HpyF3I CTNAG 2 cut(s) 177, 282
Hsp92II CATG 3 cut(s) 46, 307, 351
Kzo9I GATC 2 cut(s) 163, 272
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 30, 155, 165, 225
LweI GCATC 2 cut(s) 56, 106
MaeIII GTNAC 1 cut(s) 157
MalI GATC 2 cut(s) 165, 274
MboI GATC 2 cut(s) 163, 272
MboII GAAGA 3 cut(s) 84, 158, 268
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 2 cut(s) 17, 79
MluCI AATT 3 cut(s) 94, 232, 318
MmeI TCCRAC 3 cut(s) 93, 171, 250
MnlI CCTC 4 cut(s) 56, 99, 217, 277
MspI CCGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 83, 148
NdeI CATATG 1 cut(s) 289
NdeII GATC 2 cut(s) 163, 272
NlaIII CATG 3 cut(s) 46, 307, 351
NlaIV GGNNCC 1 cut(s) 15
NspI RCATGY 2 cut(s) 46, 351
PciSI GCTCTTC 1 cut(s) 67
PctI GAATGC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 15
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 2 cut(s) 13, 14
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 2 cut(s) 47, 227
RsaNI GTAC 2 cut(s) 46, 226
SapI GCTCTTC 1 cut(s) 67
Sau3AI GATC 2 cut(s) 163, 272
Sau96I GGNCC 2 cut(s) 13, 14
SduI GDGCHC 2 cut(s) 17, 79
SetI ASST 1 cut(s) 338
SfaNI GCATC 2 cut(s) 56, 106
Sse9I AATT 3 cut(s) 94, 232, 318
SsiI CCGC 1 cut(s) 69
TaaI ACNGT 2 cut(s) 50, 111
TaqI TCGA 1 cut(s) 209
TasI AATT 3 cut(s) 94, 232, 318
TatI WGTACW 1 cut(s) 225
TspDTI ATGAA 3 cut(s) 21, 225, 323
XapI RAATTY 2 cut(s) 94, 232
XceI RCATGY 2 cut(s) 46, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.