ATP-dependent Clp protease proteolytic
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0339141 |
| rosa_roxburghii | Rroxscaffold_5G00370800 |
| rosa_samantha | Rh6CG051500 Rh6CG052100 Rh6CG053500 Rh6DG049100 Rh6DG049400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 142 |
| AcsI | RAATTY | 1 cut(s) | 94 |
| AfaI | GTAC | 1 cut(s) | 89 |
| AlwI | GGATC | 1 cut(s) | 142 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 23 |
| ApoI | RAATTY | 1 cut(s) | 94 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 12, 44 |
| BccI | CCATC | 1 cut(s) | 115 |
| Bse118I | RCCGGY | 1 cut(s) | 13 |
| BseMII | CTCAG | 2 cut(s) | 53, 135 |
| BsiSI | CCGG | 1 cut(s) | 14 |
| Bsp1407I | TGTACA | 1 cut(s) | 87 |
| Bsp143I | GATC | 2 cut(s) | 25, 134 |
| BspCNI | CTCAG | 2 cut(s) | 52, 136 |
| BspPI | GGATC | 1 cut(s) | 142 |
| BsrFI | RCCGGY | 1 cut(s) | 13 |
| BsrGI | TGTACA | 1 cut(s) | 87 |
| BssAI | RCCGGY | 1 cut(s) | 13 |
| BssMI | GATC | 2 cut(s) | 25, 134 |
| BstAUI | TGTACA | 1 cut(s) | 87 |
| BstC8I | GCNNGC | 1 cut(s) | 15 |
| BstDEI | CTNAG | 2 cut(s) | 39, 144 |
| BstKTI | GATC | 2 cut(s) | 28, 137 |
| BstMBI | GATC | 2 cut(s) | 25, 134 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 10 |
| BstX2I | RGATCY | 1 cut(s) | 134 |
| BstYI | RGATCY | 1 cut(s) | 134 |
| Cac8I | GCNNGC | 1 cut(s) | 15 |
| CaiI | CAGNNNCTG | 1 cut(s) | 23 |
| Cfr10I | RCCGGY | 1 cut(s) | 13 |
| Csp6I | GTAC | 1 cut(s) | 88 |
| CviAII | CATG | 1 cut(s) | 166 |
| CviJI | RGCY | 1 cut(s) | 76 |
| CviKI_1 | RGCY | 1 cut(s) | 76 |
| CviQI | GTAC | 1 cut(s) | 88 |
| DdeI | CTNAG | 2 cut(s) | 39, 144 |
| DpnI | GATC | 2 cut(s) | 27, 136 |
| DpnII | GATC | 2 cut(s) | 25, 134 |
| EcoT22I | ATGCAT | 1 cut(s) | 180 |
| FaeI | CATG | 1 cut(s) | 169 |
| FaiI | YATR | 9 cut(s) | 47, 60, 80, 82, 92, 153, 167, 180, 184 |
| FatI | CATG | 1 cut(s) | 165 |
| HapII | CCGG | 1 cut(s) | 14 |
| Hin1II | CATG | 1 cut(s) | 169 |
| HpaII | CCGG | 1 cut(s) | 14 |
| Hpy188I | TCNGA | 1 cut(s) | 139 |
| Hpy188III | TCNNGA | 1 cut(s) | 102 |
| HpyCH4V | TGCA | 1 cut(s) | 178 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 10 |
| HpyF3I | CTNAG | 2 cut(s) | 39, 144 |
| Hsp92II | CATG | 1 cut(s) | 169 |
| KroI | GCCGGC | 1 cut(s) | 13 |
| KroNI | GCCGGC | 1 cut(s) | 15 |
| Kzo9I | GATC | 2 cut(s) | 25, 134 |
| LpnPI | CCDG | 3 cut(s) | 17, 27, 87 |
| MaeIII | GTNAC | 1 cut(s) | 19 |
| MalI | GATC | 2 cut(s) | 27, 136 |
| MboI | GATC | 2 cut(s) | 25, 134 |
| MboII | GAAGA | 2 cut(s) | 20, 130 |
| MflI | RGATCY | 1 cut(s) | 134 |
| MluCI | AATT | 1 cut(s) | 94 |
| MmeI | TCCRAC | 2 cut(s) | 33, 112 |
| MnlI | CCTC | 2 cut(s) | 79, 139 |
| Mph1103I | ATGCAT | 1 cut(s) | 180 |
| MroNI | GCCGGC | 1 cut(s) | 13 |
| MspI | CCGG | 1 cut(s) | 14 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 10 |
| NaeI | GCCGGC | 1 cut(s) | 15 |
| NdeII | GATC | 2 cut(s) | 25, 134 |
| NgoMIV | GCCGGC | 1 cut(s) | 13 |
| NlaIII | CATG | 1 cut(s) | 169 |
| NsiI | ATGCAT | 1 cut(s) | 180 |
| PdiI | GCCGGC | 1 cut(s) | 15 |
| PstNI | CAGNNNCTG | 1 cut(s) | 23 |
| PsuI | RGATCY | 1 cut(s) | 134 |
| RsaI | GTAC | 1 cut(s) | 89 |
| RsaNI | GTAC | 1 cut(s) | 88 |
| Sau3AI | GATC | 2 cut(s) | 25, 134 |
| SgeI | CNNG | 5 cut(s) | 26, 44, 82, 114, 178 |
| Sse9I | AATT | 1 cut(s) | 94 |
| TaqI | TCGA | 1 cut(s) | 71 |
| TasI | AATT | 1 cut(s) | 94 |
| TatI | WGTACW | 1 cut(s) | 87 |
| TspDTI | ATGAA | 1 cut(s) | 185 |
| XapI | RAATTY | 1 cut(s) | 94 |
| Zsp2I | ATGCAT | 1 cut(s) | 180 |