RchiOBHm_Chr1g0360531

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0021317
Physical Location & Seq
Forward (+)
52375798 .. 52376223
426 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58550

Sequence Viewer

Length: 426 bp
ATGAAGATCTCGGCGTCCCTCCACCATCTCTGCCGAGCGAGGAATGGACGACGATTGGAGATCTCGGTTGGGGAGGATGATCAAGAAGCAGCGCGCCCCGATCCCGCTCCATGTGACGCAGGAGATCGTTGCTCTCATCTCCACTGTATGGTTGCATGTCCGGTTCGGGGCTTGACAACCCACGCCGAAGCATACAAGCCCTTCATCAAGAGCTACCATGTCATCGTCGGGGACGGCGAAGTCTGTATTCTTTGTGAGGTCCCAGCCTACAACAACATGGAGAGGCTAGACTTGCTGGATGAGGAGAGCCAACTCATCAGCTTCAGCATGGTGGGTGGCGACCACAGGCTGTCTTCTTCTTCTTCTTGTGTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCAGAACATAGGCCACAGGTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

141

Amino Acids

15.75

Weight (kDa)

5.69

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021317)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360531
rosa_laevigata RLG00000024364
rosa_multiflora Rmu_co8273625.1_g000001
rosa_roxburghii Rroxscaffold_7G00194360
rosa_samantha Rh1AG291800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccB7I CCANNNNNTGG 1 cut(s) 148
AccBSI CCGCTC 1 cut(s) 107
AccII CGCG 1 cut(s) 94
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 307
AcyI GRCGYC 1 cut(s) 14
AfiI CCNNNNNNNGG 2 cut(s) 148, 167
AluBI AGCT 2 cut(s) 213, 321
AluI AGCT 2 cut(s) 213, 321
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 89
AspLEI GCGC 2 cut(s) 94, 96
AspS9I GGNCC 1 cut(s) 259
AvaII GGWCC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 250
BclI TGATCA 1 cut(s) 79
BfaI CTAG 2 cut(s) 287, 424
BglII AGATCT 2 cut(s) 6, 60
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 167
BseGI GGATG 2 cut(s) 82, 304
BseLI CCNNNNNNNGG 2 cut(s) 148, 167
BsePI GCGCGC 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 101
BseYI CCCAGC 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 2 cut(s) 245, 245
BslI CCNNNNNNNGG 2 cut(s) 148, 167
BsmFI GGGAC 2 cut(s) 245, 245
BsnI GGCC 1 cut(s) 412
Bsp143I GATC 5 cut(s) 6, 60, 79, 100, 124
BspACI CCGC 1 cut(s) 105
BspANI GGCC 1 cut(s) 412
BspFNI CGCG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 107
BssHII GCGCGC 1 cut(s) 92
BssMI GATC 5 cut(s) 6, 60, 79, 100, 124
BssNI GRCGYC 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 94
BstF5I GGATG 2 cut(s) 82, 304
BstFNI CGCG 1 cut(s) 94
BstHHI GCGC 2 cut(s) 94, 96
BstKTI GATC 5 cut(s) 9, 63, 82, 103, 127
BstMBI GATC 5 cut(s) 6, 60, 79, 100, 124
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstNSI RCATGY 1 cut(s) 159
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 2 cut(s) 6, 60
BstYI RGATCY 2 cut(s) 6, 60
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 82, 304
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 2 cut(s) 94, 96
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 2 cut(s) 3, 125
CviAII CATG 5 cut(s) 111, 156, 218, 277, 328
CviJI RGCY 9 cut(s) 171, 199, 213, 266, 286, 309, 321, 349, 412
CviKI_1 RGCY 9 cut(s) 171, 199, 213, 266, 286, 309, 321, 349, 412
DpnI GATC 5 cut(s) 8, 62, 81, 102, 126
DpnII GATC 5 cut(s) 6, 60, 79, 100, 124
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 259
FaeI CATG 5 cut(s) 114, 159, 221, 280, 331
FaiI YATR 8 cut(s) 112, 149, 157, 193, 219, 278, 329, 408
FaqI GGGAC 2 cut(s) 245, 245
FatI CATG 5 cut(s) 110, 155, 217, 276, 327
FauI CCCGC 1 cut(s) 112
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 89, 311
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 2 cut(s) 287, 424
GlaI GCGC 2 cut(s) 93, 95
GluI GCNGC 1 cut(s) 90
GsaI CCCAGC 1 cut(s) 266
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 161
HgaI GACGC 2 cut(s) 3, 125
HhaI GCGC 2 cut(s) 94, 96
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 5 cut(s) 114, 159, 221, 280, 331
Hin6I GCGC 2 cut(s) 92, 94
HinP1I GCGC 2 cut(s) 92, 94
HpaII CCGG 1 cut(s) 161
Hpy188III TCNNGA 2 cut(s) 83, 208
Hpy99I CGWCG 2 cut(s) 54, 230
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 5 cut(s) 114, 159, 221, 280, 331
HspAI GCGC 2 cut(s) 92, 94
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 5 cut(s) 6, 60, 79, 100, 124
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 6 cut(s) 105, 174, 276, 281, 331, 401
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 2 cut(s) 287, 424
MaeIII GTNAC 1 cut(s) 113
MalI GATC 5 cut(s) 8, 62, 81, 102, 126
MbiI CCGCTC 1 cut(s) 107
MboI GATC 5 cut(s) 6, 60, 79, 100, 124
MboII GAAGA 5 cut(s) 16, 345, 348, 351, 354
MflI RGATCY 2 cut(s) 6, 60
MnlI CCTC 6 cut(s) 29, 33, 67, 250, 276, 295
MspI CCGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 292
NdeII GATC 5 cut(s) 6, 60, 79, 100, 124
NlaIII CATG 5 cut(s) 114, 159, 221, 280, 331
NlaIV GGNNCC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 1 cut(s) 159
PauI GCGCGC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
PsuI RGATCY 2 cut(s) 6, 60
PteI GCGCGC 1 cut(s) 92
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 5 cut(s) 6, 60, 79, 100, 124
Sau96I GGNCC 1 cut(s) 259
SetI ASST 4 cut(s) 215, 261, 323, 420
SinI GGWCC 1 cut(s) 259
SsiI CCGC 1 cut(s) 105
SspMI CTAG 2 cut(s) 287, 424
TaaI ACNGT 1 cut(s) 146
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 17, 193
TspRI CASTG 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 259
XceI RCATGY 1 cut(s) 159
XspI CTAG 2 cut(s) 287, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.