RLG00000024364

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0021317
Physical Location & Seq
Forward (+)
35156432 .. 35156809
378 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024364

Sequence Viewer

Length: 378 bp
ATGAAGATCTCAACATCCCTCCACCATCTCTGTCGAGCGAGGAATGGACGGCGATTGGAGATCTCGGTTGGGGATGATGATCAAGAAGTAGCGCGCCCCGATCCAGCTCCCCGAGATTCAAGAGATCGCTGCTCCCGTCTCCACCATGTGGTTGCCGGGCGAGGAATGGACGACGATTGGAGATCTCGGTTGGGGATGATGATCAAGAAGCAGCTCGCCCCGATCCTGCTCTCCGTACGCAAGAGATCGCTGCTCCCGTCTCCACCATATGGTTGCCGGTCCGATCCAGTGCTTGACAACCCTCAGTTAAGCATACATGCCCTTCGTCAAGAGCTGCCATGTCATTGTCGGGGAAGGCGACATCTATATTCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.29

Weight (kDa)

10.06

Isoelectric Point (pI)

67.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021317)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360531
rosa_laevigata RLG00000024364
rosa_multiflora Rmu_co8273625.1_g000001
rosa_roxburghii Rroxscaffold_7G00194360
rosa_samantha Rh1AG291800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 148, 269
AccII CGCG 1 cut(s) 94
AclWI GGATC 3 cut(s) 95, 217, 278
AdeI CACNNNGTG 1 cut(s) 148
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 148, 269
AgsI TTSAA 1 cut(s) 120
AluBI AGCT 3 cut(s) 107, 214, 334
AluI AGCT 3 cut(s) 107, 214, 334
Alw26I GTCTC 2 cut(s) 143, 264
AlwI GGATC 3 cut(s) 95, 217, 278
Ama87I CYCGRG 1 cut(s) 111
ApeKI GCWGC 4 cut(s) 129, 211, 250, 334
AspLEI GCGC 2 cut(s) 94, 96
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 1 cut(s) 279
BbvI GCAGC 4 cut(s) 116, 223, 237, 321
BccI CCATC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 65
BclI TGATCA 2 cut(s) 79, 201
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 143, 264
BglII AGATCT 3 cut(s) 6, 60, 182
BisI GCNGC 4 cut(s) 130, 212, 251, 335
BlsI GCNGC 4 cut(s) 131, 213, 252, 336
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 157
BsaBI GATNNNNATC 2 cut(s) 78, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 269
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 287
Bse8I GATNNNNATC 2 cut(s) 78, 200
BseGI GGATG 3 cut(s) 14, 79, 201
BseJI GATNNNNATC 2 cut(s) 78, 200
BseLI CCNNNNNNNGG 2 cut(s) 148, 269
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 287
BsePI GCGCGC 1 cut(s) 92
BseXI GCAGC 4 cut(s) 116, 223, 237, 321
Bsh1236I CGCG 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 2 cut(s) 156, 277
BsiWI CGTACG 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 148, 269
BsmAI GTCTC 2 cut(s) 143, 264
BsmBI CGTCTC 2 cut(s) 143, 264
BsoBI CYCGRG 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 316
BspFNI CGCG 1 cut(s) 94
BspPI GGATC 3 cut(s) 95, 217, 278
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 276
BssHII GCGCGC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 94, 216
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 3 cut(s) 14, 79, 201
BstFNI CGCG 1 cut(s) 94
BstHHI GCGC 2 cut(s) 94, 96
BstMAI GTCTC 2 cut(s) 143, 264
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 155
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 4 cut(s) 116, 223, 237, 321
BstX2I RGATCY 3 cut(s) 6, 60, 182
BstYI RGATCY 3 cut(s) 6, 60, 182
BtsCI GGATG 3 cut(s) 14, 79, 201
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 94, 216
CfoI GCGC 2 cut(s) 94, 96
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 279
CpoI CGGWCCG 1 cut(s) 279
Csp6I GTAC 1 cut(s) 236
CspI CGGWCCG 1 cut(s) 279
CviAII CATG 3 cut(s) 146, 317, 339
CviJI RGCY 3 cut(s) 107, 214, 334
CviKI_1 RGCY 3 cut(s) 107, 214, 334
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 1 cut(s) 303
DraIII CACNNNGTG 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 111
Esp3I CGTCTC 2 cut(s) 143, 264
FaeI CATG 3 cut(s) 149, 320, 342
FaiI YATR 7 cut(s) 147, 268, 270, 314, 318, 340, 367
FatI CATG 3 cut(s) 145, 316, 338
FauNDI CATATG 1 cut(s) 268
FbaI TGATCA 2 cut(s) 79, 201
Fnu4HI GCNGC 4 cut(s) 130, 212, 251, 335
FokI GGATG 2 cut(s) 86, 208
Fsp4HI GCNGC 4 cut(s) 130, 212, 251, 335
GlaI GCGC 2 cut(s) 93, 95
GluI GCNGC 4 cut(s) 130, 212, 251, 335
HapII CCGG 2 cut(s) 156, 277
HhaI GCGC 2 cut(s) 94, 96
Hin1II CATG 3 cut(s) 149, 320, 342
Hin6I GCGC 2 cut(s) 92, 94
HinP1I GCGC 2 cut(s) 92, 94
HinfI GANTC 1 cut(s) 116
HpaII CCGG 2 cut(s) 156, 277
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 5 cut(s) 83, 120, 205, 329, 375
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 332, 348
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 3 cut(s) 149, 320, 342
HspAI GCGC 2 cut(s) 92, 94
Ksp22I TGATCA 2 cut(s) 79, 201
LmnI GCTCC 3 cut(s) 112, 137, 258
LpnPI CCDG 5 cut(s) 117, 169, 239, 290, 300
Lsp1109I GCAGC 4 cut(s) 116, 223, 237, 321
MboII GAAGA 2 cut(s) 16, 363
MflI RGATCY 3 cut(s) 6, 60, 182
MnlI CCTC 4 cut(s) 29, 33, 155, 312
MseI TTAA 1 cut(s) 308
MspI CCGG 2 cut(s) 156, 277
MspR9I CCNGG 1 cut(s) 157
MvnI CGCG 1 cut(s) 94
NciI CCSGG 1 cut(s) 157
NdeI CATATG 1 cut(s) 268
NlaIII CATG 3 cut(s) 149, 320, 342
NspI RCATGY 1 cut(s) 320
PauI GCGCGC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 3 cut(s) 133, 254, 355
PfeI GAWTC 1 cut(s) 116
Pfl23II CGTACG 1 cut(s) 235
PflMI CCANNNNNTGG 2 cut(s) 148, 269
PkrI GCNGC 4 cut(s) 131, 213, 252, 336
PspLI CGTACG 1 cut(s) 235
PspPI GGNCC 1 cut(s) 279
PsuI RGATCY 3 cut(s) 6, 60, 182
PteI GCGCGC 1 cut(s) 92
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
Rsr2I CGGWCCG 1 cut(s) 279
RsrII CGGWCCG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 4 cut(s) 130, 212, 251, 335
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 157
SetI ASST 3 cut(s) 109, 216, 336
SinI GGWCC 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 155
TaqI TCGA 1 cut(s) 34
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 1 cut(s) 294
TseI GCWGC 4 cut(s) 129, 211, 250, 334
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 294
Van91I CCANNNNNTGG 2 cut(s) 148, 269
VpaK11BI GGWCC 1 cut(s) 279
XceI RCATGY 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.