Rh1AG291800

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0021317
Physical Location & Seq
Forward (+)
52163846 .. 52164187
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG291800.1

Sequence Viewer

Length: 342 bp
ATGAAGATCTCGGCGTCCCTCCACCATCTCTGCCGAGCGAGGAATGGACGGCGATTAGAGATCTCGATTGGGGATGATGATCAAGAAGCAGCGCACCCCAATCTCGCTCCCTGTGATGCAGGAGATCGTTGCTCTCATCTCCACCGTGTGGCTGCAGGGCCGGTTCGGCGCTTGATAACCCACGCCGAAGCATACAAGCCCTTCATCAAGAGCTACCATGTCATCGTCGGGGACGACGAAGTCTGTATTCTTCGTGAGGTCCCAGCCTACAACATCATGGAGAGGCTAGACTTGCTGGATGAGGAGAGCCACCTCATTAGCTTCAGCATGGTGGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

113

Amino Acids

12.61

Weight (kDa)

6.02

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021317)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360531
rosa_laevigata RLG00000024364
rosa_multiflora Rmu_co8273625.1_g000001
rosa_roxburghii Rroxscaffold_7G00194360
rosa_samantha Rh1AG291800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccB7I CCANNNNNTGG 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 307
AcyI GRCGYC 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 148
AluBI AGCT 2 cut(s) 213, 321
AluI AGCT 2 cut(s) 213, 321
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 89, 152
AspLEI GCGC 2 cut(s) 94, 171
AspS9I GGNCC 2 cut(s) 158, 259
AvaII GGWCC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 101, 139
BccI CCATC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 65
BclI TGATCA 1 cut(s) 79
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 172
BglI GCCNNNNNGGC 1 cut(s) 166
BglII AGATCT 2 cut(s) 6, 60
BisI GCNGC 2 cut(s) 90, 153
BlsI GCNGC 2 cut(s) 91, 154
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 158, 259
BmiI GGNNCC 1 cut(s) 261
BmsI GCATC 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 160
Bse8I GATNNNNATC 1 cut(s) 78
BseGI GGATG 2 cut(s) 79, 304
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 101, 139
BseYI CCCAGC 1 cut(s) 262
BshFI GGCC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 2 cut(s) 245, 245
BslI CCNNNNNNNGG 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 245, 245
BsnI GGCC 1 cut(s) 160
Bsp143I GATC 4 cut(s) 6, 60, 79, 124
BspANI GGCC 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssMI GATC 4 cut(s) 6, 60, 79, 124
BssNI GRCGYC 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 14
BstF5I GGATG 2 cut(s) 79, 304
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 2 cut(s) 94, 171
BstKTI GATC 4 cut(s) 9, 63, 82, 127
BstMBI GATC 4 cut(s) 6, 60, 79, 124
BstMWI GCNNNNNNNGC 2 cut(s) 166, 292
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 101, 139
BstX2I RGATCY 2 cut(s) 6, 60
BstYI RGATCY 2 cut(s) 6, 60
BsuRI GGCC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 79, 304
CfoI GCGC 2 cut(s) 94, 171
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 158, 259
CseI GACGC 1 cut(s) 3
CviAII CATG 3 cut(s) 218, 277, 328
CviJI RGCY 8 cut(s) 152, 160, 199, 213, 266, 286, 309, 321
CviKI_1 RGCY 8 cut(s) 152, 160, 199, 213, 266, 286, 309, 321
DpnI GATC 4 cut(s) 8, 62, 81, 126
DpnII GATC 4 cut(s) 6, 60, 79, 124
DraIII CACNNNGTG 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 259
FaeI CATG 3 cut(s) 221, 280, 331
FaiI YATR 4 cut(s) 193, 219, 278, 329
FaqI GGGAC 2 cut(s) 245, 245
FatI CATG 3 cut(s) 217, 276, 327
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 90, 153
FokI GGATG 2 cut(s) 86, 311
Fsp4HI GCNGC 2 cut(s) 90, 153
FspBI CTAG 1 cut(s) 287
GlaI GCGC 2 cut(s) 93, 170
GluI GCNGC 2 cut(s) 90, 153
GsaI CCCAGC 1 cut(s) 266
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 1 cut(s) 160
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 3
HhaI GCGC 2 cut(s) 94, 171
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 3 cut(s) 221, 280, 331
Hin6I GCGC 2 cut(s) 92, 169
HinP1I GCGC 2 cut(s) 92, 169
HpaII CCGG 1 cut(s) 161
Hpy188III TCNNGA 4 cut(s) 64, 83, 208, 254
Hpy99I CGWCG 2 cut(s) 230, 239
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 119, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 292
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 3 cut(s) 221, 280, 331
HspAI GCGC 2 cut(s) 92, 169
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 4 cut(s) 6, 60, 79, 124
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 6 cut(s) 105, 124, 141, 174, 276, 281
Lsp1109I GCAGC 2 cut(s) 101, 139
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 287
MalI GATC 4 cut(s) 8, 62, 81, 126
MboI GATC 4 cut(s) 6, 60, 79, 124
MboII GAAGA 2 cut(s) 16, 242
MflI RGATCY 2 cut(s) 6, 60
MnlI CCTC 6 cut(s) 29, 33, 250, 276, 295, 323
MspI CCGG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 166, 292
NdeII GATC 4 cut(s) 6, 60, 79, 124
NlaIII CATG 3 cut(s) 221, 280, 331
NlaIV GGNNCC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 59
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 234
PflFI GACNNNGTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 2 cut(s) 91, 154
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 2 cut(s) 158, 259
PspPPI RGGWCCY 1 cut(s) 259
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 6, 60
PsyI GACNNNGTC 1 cut(s) 239
SatI GCNGC 2 cut(s) 90, 153
Sau3AI GATC 4 cut(s) 6, 60, 79, 124
Sau96I GGNCC 2 cut(s) 158, 259
SetI ASST 4 cut(s) 215, 261, 315, 323
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 259
SspMI CTAG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 65
TseI GCWGC 2 cut(s) 89, 152
TspDTI ATGAA 2 cut(s) 17, 193
Tth111I GACNNNGTC 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 259
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.