Rroxscaffold_7G00194360

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0021317
Physical Location & Seq
Forward (+)
36127481 .. 36129580
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194360.1

Sequence Viewer

Length: 591 bp
ATGAAGATCTCGGCGTCCTTCCACCATCTTTGCCGAGCAAGGAATGGACGGCGATTGGAGATCTCGGTTGGGGATGATGATCAAGAAGCAACGCGCCCCGATCCCGCTCCCCGTGACTTAGGGGATCGTTGCTCTCGTCTCCATCGTGTGGTTGCCGGTCCGGTTCGGCTCTTGACAACCCACGCCAAGCATACAAGCCCTTCGTCAAGAGCTGCCATGTCATCGTCGGGGAAGGTCCCGGCCTACAGCAGCATGGAGAGGCTAGACTTGCTGGATGAGGAGAGCCACCTCATCGGCTTCGACATGGTGGGCGGCGACCACAATCGAAGGACCCCAAATTTTGGAAGAAGACGACGACTTGTCGAAGATGGAAGGATGTTAAGAGGAAATACGGAGTCTATGAGTGACTCGGGTCTCAATCGCCGGCTGCTCGAGCTCCATTCCTCCATCTCCACCCACCTCCTCTCCCTCGACCCTCATATCAACACCTTGGCCTTGTCGGAGCTCTACAAGGTCGTTCTCCTCTTACCTCTCCTCAAGCCCAATCCCGGCGACTCCTCCTCTGCTGCCGCTTCTCCGCCAAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

196

Amino Acids

21.62

Weight (kDa)

9.61

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021317)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360531
rosa_laevigata RLG00000024364
rosa_multiflora Rmu_co8273625.1_g000001
rosa_roxburghii Rroxscaffold_7G00194360
rosa_samantha Rh1AG291800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 148, 341
AccBSI CCGCTC 1 cut(s) 107
AccII CGCG 1 cut(s) 94
AciI CCGC 4 cut(s) 105, 312, 570, 578
AclWI GGATC 2 cut(s) 95, 132
AcsI RAATTY 1 cut(s) 337
AcyI GRCGYC 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 148, 341, 548
AhdI GACNNNNNGTC 1 cut(s) 359
AluBI AGCT 3 cut(s) 212, 436, 505
AluI AGCT 3 cut(s) 212, 436, 505
Alw21I GWGCWC 2 cut(s) 438, 507
Alw26I GTCTC 2 cut(s) 143, 419
AlwI GGATC 2 cut(s) 95, 132
Ama87I CYCGRG 2 cut(s) 409, 431
AoxI GGCC 2 cut(s) 240, 492
ApeKI GCWGC 4 cut(s) 212, 249, 427, 566
ApoI RAATTY 1 cut(s) 337
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 3 cut(s) 158, 235, 330
AsuC2I CCSGG 2 cut(s) 239, 549
AvaI CYCGRG 2 cut(s) 409, 431
AvaII GGWCC 3 cut(s) 158, 235, 330
BanII GRGCYC 2 cut(s) 438, 507
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 2 cut(s) 438, 507
BbvI GCAGC 4 cut(s) 199, 261, 414, 553
BccI CCATC 4 cut(s) 33, 150, 362, 455
BceAI ACGGC 1 cut(s) 65
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 2 cut(s) 239, 549
BcoDI GTCTC 2 cut(s) 143, 419
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 244
BglII AGATCT 2 cut(s) 6, 60
BisI GCNGC 6 cut(s) 213, 250, 313, 428, 567, 570
BlsI GCNGC 6 cut(s) 214, 251, 314, 429, 568, 571
Bme1390I CCNGG 2 cut(s) 239, 549
Bme18I GGWCC 3 cut(s) 158, 235, 330
BmeRI GACNNNNNGTC 1 cut(s) 359
BmeT110I CYCGRG 2 cut(s) 409, 431
BmgT120I GGNCC 3 cut(s) 158, 235, 330
BmiI GGNNCC 2 cut(s) 237, 332
BmrFI CCNGG 2 cut(s) 239, 549
BoxI GACNNNNGTC 1 cut(s) 411
BpiI GAAGAC 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 2 cut(s) 239, 549
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 341, 548
Bse118I RCCGGY 2 cut(s) 155, 423
Bse8I GATNNNNATC 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 3 cut(s) 79, 280, 381
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 3 cut(s) 148, 341, 548
BseRI GAGGAG 6 cut(s) 293, 452, 512, 524, 547, 550
BseXI GCAGC 4 cut(s) 199, 261, 414, 553
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 2 cut(s) 242, 494
BsiHKAI GWGCWC 2 cut(s) 438, 507
BsiHKCI CYCGRG 2 cut(s) 409, 431
BsiSI CCGG 5 cut(s) 156, 161, 239, 424, 549
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 148, 341, 548
BsmAI GTCTC 2 cut(s) 143, 419
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 2 cut(s) 242, 494
Bso31I GGTCTC 1 cut(s) 419
BsoBI CYCGRG 2 cut(s) 409, 431
Bsp1286I GDGCHC 2 cut(s) 438, 507
Bsp143I GATC 5 cut(s) 6, 60, 79, 100, 124
BspACI CCGC 4 cut(s) 105, 312, 570, 578
BspANI GGCC 2 cut(s) 242, 494
BspFNI CGCG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 237, 332
BspPI GGATC 2 cut(s) 95, 132
BspTNI GGTCTC 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 107
BsrFI RCCGGY 2 cut(s) 155, 423
BssAI RCCGGY 2 cut(s) 155, 423
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 5 cut(s) 6, 60, 79, 100, 124
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 489
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 1 cut(s) 118
BstF5I GGATG 3 cut(s) 79, 280, 381
BstFNI CGCG 1 cut(s) 94
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 5 cut(s) 9, 63, 82, 103, 127
BstMAI GTCTC 2 cut(s) 143, 419
BstMBI GATC 5 cut(s) 6, 60, 79, 100, 124
BstMWI GCNNNNNNNGC 2 cut(s) 268, 433
BstPAI GACNNNNGTC 1 cut(s) 411
BstSCI CCNGG 2 cut(s) 237, 547
BstSFI CTRYAG 1 cut(s) 244
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 4 cut(s) 199, 261, 414, 553
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 2 cut(s) 6, 60
BstYI RGATCY 2 cut(s) 6, 60
BsuRI GGCC 2 cut(s) 242, 494
BtsCI GGATG 3 cut(s) 79, 280, 381
Cac8I GCNNGC 1 cut(s) 425
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 2 cut(s) 155, 423
Cfr13I GGNCC 3 cut(s) 158, 235, 330
CpoI CGGWCCG 1 cut(s) 158
CseI GACGC 1 cut(s) 3
CspCI CAANNNNNGTGG 2 cut(s) 11, 46
CspI CGGWCCG 1 cut(s) 158
CviAII CATG 3 cut(s) 217, 253, 304
DdeI CTNAG 1 cut(s) 118
DpnI GATC 5 cut(s) 8, 62, 81, 102, 126
DpnII GATC 5 cut(s) 6, 60, 79, 100, 124
DriI GACNNNNNGTC 1 cut(s) 359
Eam1105I GACNNNNNGTC 1 cut(s) 359
EciI GGCGGA 1 cut(s) 567
Ecl136II GAGCTC 2 cut(s) 436, 505
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 2 cut(s) 438, 507
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 3 cut(s) 158, 235, 330
Eco53kI GAGCTC 2 cut(s) 436, 505
Eco88I CYCGRG 2 cut(s) 409, 431
EcoICRI GAGCTC 2 cut(s) 436, 505
EcoO109I RGGNCCY 2 cut(s) 235, 330
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 2 cut(s) 438, 507
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 3 cut(s) 220, 256, 307
FaiI YATR 6 cut(s) 192, 218, 254, 305, 401, 480
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 216, 252, 303
FauI CCCGC 1 cut(s) 112
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 6 cut(s) 213, 250, 313, 428, 567, 570
FokI GGATG 3 cut(s) 86, 287, 388
FriOI GRGCYC 2 cut(s) 438, 507
Fsp4HI GCNGC 6 cut(s) 213, 250, 313, 428, 567, 570
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 95
GluI GCNGC 6 cut(s) 213, 250, 313, 428, 567, 570
HaeIII GGCC 2 cut(s) 242, 494
HapII CCGG 5 cut(s) 156, 161, 239, 424, 549
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 3 cut(s) 220, 256, 307
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 3 cut(s) 395, 407, 554
HpaII CCGG 5 cut(s) 156, 161, 239, 424, 549
Hpy188I TCNGA 1 cut(s) 502
Hpy188III TCNNGA 3 cut(s) 83, 172, 207
Hpy99I CGWCG 2 cut(s) 229, 357
HpyAV CCTTC 5 cut(s) 28, 210, 226, 321, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 268, 433
HpyF3I CTNAG 1 cut(s) 118
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 3 cut(s) 220, 256, 307
HspAI GCGC 1 cut(s) 94
KroI GCCGGC 1 cut(s) 423
KroNI GCCGGC 1 cut(s) 425
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 5 cut(s) 6, 60, 79, 100, 124
LmnI GCTCC 3 cut(s) 112, 441, 502
LpnPI CCDG 6 cut(s) 169, 174, 252, 257, 437, 562
Lsp1109I GCAGC 4 cut(s) 199, 261, 414, 553
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 113, 404
MalI GATC 5 cut(s) 8, 62, 81, 102, 126
MbiI CCGCTC 1 cut(s) 107
MboI GATC 5 cut(s) 6, 60, 79, 100, 124
MboII GAAGA 4 cut(s) 16, 357, 360, 377
MflI RGATCY 2 cut(s) 6, 60
MhlI GDGCHC 2 cut(s) 438, 507
MluCI AATT 1 cut(s) 337
MlyI GAGTC 3 cut(s) 401, 404, 548
MmeI TCCRAC 1 cut(s) 480
MroNI GCCGGC 1 cut(s) 423
MseI TTAA 2 cut(s) 380, 589
MspI CCGG 5 cut(s) 156, 161, 239, 424, 549
MspR9I CCNGG 2 cut(s) 239, 549
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 268, 433
NaeI GCCGGC 1 cut(s) 425
NciI CCSGG 2 cut(s) 239, 549
NdeII GATC 5 cut(s) 6, 60, 79, 100, 124
NgoMIV GCCGGC 1 cut(s) 423
NlaIII CATG 3 cut(s) 220, 256, 307
NlaIV GGNNCC 2 cut(s) 237, 332
NmeAIII GCCGAG 1 cut(s) 59
NmuCI GTSAC 2 cut(s) 113, 404
PaeR7I CTCGAG 1 cut(s) 431
PcsI WCGNNNNNNNCGW 2 cut(s) 133, 142
PdiI GCCGGC 1 cut(s) 425
PflMI CCANNNNNTGG 2 cut(s) 148, 341
PkrI GCNGC 6 cut(s) 214, 251, 314, 429, 568, 571
PleI GAGTC 3 cut(s) 401, 403, 548
PpsI GAGTC 3 cut(s) 401, 403, 548
PpuMI RGGWCCY 2 cut(s) 235, 330
PshAI GACNNNNGTC 1 cut(s) 411
Psp124BI GAGCTC 2 cut(s) 438, 507
Psp5II RGGWCCY 2 cut(s) 235, 330
PspN4I GGNNCC 2 cut(s) 237, 332
PspPI GGNCC 3 cut(s) 158, 235, 330
PspPPI RGGWCCY 2 cut(s) 235, 330
PspXI VCTCGAGB 1 cut(s) 431
PsuI RGATCY 2 cut(s) 6, 60
Rsr2I CGGWCCG 1 cut(s) 158
RsrII CGGWCCG 1 cut(s) 158
SacI GAGCTC 2 cut(s) 438, 507
SaqAI TTAA 2 cut(s) 380, 589
SatI GCNGC 6 cut(s) 213, 250, 313, 428, 567, 570
Sau3AI GATC 5 cut(s) 6, 60, 79, 100, 124
Sau96I GGNCC 3 cut(s) 158, 235, 330
SchI GAGTC 3 cut(s) 401, 404, 548
ScrFI CCNGG 2 cut(s) 239, 549
SduI GDGCHC 2 cut(s) 438, 507
SetI ASST 9 cut(s) 214, 237, 291, 438, 462, 491, 507, 516, 532
SfcI CTRYAG 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 431
SinI GGWCC 3 cut(s) 158, 235, 330
SlaI CTCGAG 1 cut(s) 431
SmlI CTYRAG 2 cut(s) 431, 536
SmoI CTYRAG 2 cut(s) 431, 536
Sse9I AATT 1 cut(s) 337
SsiI CCGC 4 cut(s) 105, 312, 570, 578
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 2 cut(s) 438, 507
StyD4I CCNGG 2 cut(s) 237, 547
StyI CCWWGG 1 cut(s) 489
TaqI TCGA 5 cut(s) 300, 325, 363, 432, 471
TasI AATT 1 cut(s) 337
TauI GCSGC 2 cut(s) 315, 572
Tru1I TTAA 2 cut(s) 380, 589
Tru9I TTAA 2 cut(s) 380, 589
TseFI GTSAC 2 cut(s) 113, 404
TseI GCWGC 4 cut(s) 212, 249, 427, 566
Tsp45I GTSAC 2 cut(s) 113, 404
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 407
Van91I CCANNNNNTGG 2 cut(s) 148, 341
VpaK11BI GGWCC 3 cut(s) 158, 235, 330
XapI RAATTY 1 cut(s) 337
XhoI CTCGAG 1 cut(s) 431
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.