RchiOBHm_Chr1g0361681
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0020468
Physical Location & Seq
Reverse (-)
53526811 .. 53529825
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58654

Sequence Viewer

Length: 1335 bp
ATGGGCAGCAGCAGCAGCAGCCTCACATTTCCGAAGGGATTTCGATTCCATCCCACCAACGAGGAGGTGCTGAGCTACTTGGAGATGAAGAATCAGGGCAGGGATTCTGAAATCACAGCCATGATCCCCGAAATCAATCTTTGCAGGCACGATCCCCCCGATTTACCAGCACTGGTGCTTGCACGGGGAGAACTACTGGACAGGGAGTGGTACGTTGCCCTCATGTCTTGGGACAGGCAGTGGTACTTCTACAGTCGGCGTGATTACAAGTACATCAAGAGCACTCGCTCCAACAGGACTACAAGGAATGGGTACTGGAAGATCACAGGCAAGGAACTTGCAATCAAGGCCCCGGGCTCCAAAGCTGTGATTGGGATAAAGAGGACCTTGACCTTCTACGTTAAACGTGGAGTGCCGAAACCCCAGAAGACCAACTGGGTTCTTCATGAGTTTGATCTCACCAAGGCAAATTCTGATGACCAGATAGGGGACTTTGTTCTCTGCCGCTTGAAGTACAAGTCAGACGACTCTGATCATGATAAGCAGGTCTGCGATGGAGGTGAAACTGGTACCGGTATGGCCTCCAATGTTGAAAATCAGGCTGCAGCAGAGGGTTTGATTGCAGAAGCAGGAGAAAACCTGGCAATCAAGGAGCCGGGAGATGCTGTCTGGGAATCTGATGGCAATGAGCATCAACTTAAAGGATTGCAAACTGATCCTTGTGGTAAAGATAGGAATGATCTTCCGATCTCTGTTGAAGGTCAATCTAATAGCTGCAATTCGTCTGATTCTGATACGATTAAAGAGCTACATGATAAGCCAGAAAATCTGGACTCACCCTCTGATCAACCTCCGCCACCTCAACCGCAGTCACCACAAAAGCTGGGCAATGTTTCACCCACCACCAATGCCCATATTGATGAATGTCGCAAGAGGAAAGTTCAATTTGGGGATAATAACCCTTCTCCTACTAAACAGAATCATATTTCAACCAATGACGTTGATGAACTAGCTAGCAACACTGCATCTAATTCTATAAATCAAGCTGCAGATGCAATTCCAGAGGGGTGTTCTCAACCAGGAGAAAATCTGGGATCTGATCCATTTCAGTCACTGGAACCACTATCAATAAACAGAGAACTGAGAGATTTTTCCCATTACAATAATTCTATTGGATGGGATGATATGCCAATTGAAGGTATTGACTTTTCTCTCGTAAAGTTCTTAGATACAGTTATTGATGAAGGTAGCAGTGACGGACACAACAAAGTCGTCTGTGGATTGGTAAATGATTGTTCTACATCAGCCATTGGAGCAACACTCCAATGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

444

Amino Acids

49.03

Weight (kDa)

4.92

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 153 3e-30 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020468)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0361681
rosa_laevigata RLG00000027710
rosa_multiflora Rmu_sc0001034.1_g000015
rosa_roxburghii Rroxscaffold_4G00294820
rosa_rugosa Rorug01G0290600
rosa_samantha Rh1AG300700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 535
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 569
AciI CCGC 3 cut(s) 505, 854, 866
AclWI GGATC 5 cut(s) 118, 146, 710, 1094, 1102
AcsI RAATTY 1 cut(s) 469
AfaI GTAC 6 cut(s) 212, 245, 272, 314, 515, 571
AfiI CCNNNNNNNGG 2 cut(s) 487, 1196
AgeI ACCGGT 1 cut(s) 572
AgsI TTSAA 6 cut(s) 511, 593, 758, 944, 990, 1196
AjnI CCWGG 2 cut(s) 639, 1078
AluBI AGCT 8 cut(s) 75, 365, 774, 808, 883, 1013, 1046, 1332
AluI AGCT 8 cut(s) 75, 365, 774, 808, 883, 1013, 1046, 1332
Alw21I GWGCWC 1 cut(s) 284
AlwI GGATC 5 cut(s) 118, 146, 710, 1094, 1102
AlwNI CAGNNNCTG 1 cut(s) 1114
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 2 cut(s) 348, 579
ApeKI GCWGC 9 cut(s) 6, 9, 12, 15, 18, 602, 605, 774, 1046
ApoI RAATTY 1 cut(s) 469
AsiGI ACCGGT 1 cut(s) 572
Asp718I GGTACC 1 cut(s) 569
AspS9I GGNCC 2 cut(s) 349, 384
AsuC2I CCSGG 3 cut(s) 353, 354, 657
AsuHPI GGTGA 5 cut(s) 451, 572, 828, 864, 888
AsuNHI GCTAGC 1 cut(s) 1013
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 9 cut(s) 18, 21, 24, 27, 30, 589, 617, 761, 1033
BccI CCATC 4 cut(s) 57, 548, 674, 1170
BciT130I CCWGG 2 cut(s) 641, 1080
BclI TGATCA 2 cut(s) 532, 844
BcnI CCSGG 3 cut(s) 353, 354, 657
BfaI CTAG 2 cut(s) 1010, 1014
BfmI CTRYAG 3 cut(s) 250, 603, 1047
BfuAI ACCTGC 1 cut(s) 535
BlpI GCTNAGC 1 cut(s) 71
Bme1390I CCNGG 5 cut(s) 353, 354, 641, 657, 1080
Bme18I GGWCC 1 cut(s) 384
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 349, 384
BmiI GGNNCC 5 cut(s) 351, 358, 571, 654, 1119
BmrFI CCNGG 5 cut(s) 353, 354, 641, 657, 1080
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 4 cut(s) 652, 700, 1034, 1042
BmtI GCTAGC 1 cut(s) 1017
BmuI ACTGGG 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 434
BplI GAGNNNNNCTC 1 cut(s) 1305
Bpu1102I GCTNAGC 1 cut(s) 71
BpuMI CCSGG 3 cut(s) 353, 354, 657
BsaJI CCNNGG 3 cut(s) 351, 352, 462
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 1196
Bse118I RCCGGY 1 cut(s) 572
Bse1I ACTGG 6 cut(s) 177, 201, 320, 440, 571, 1119
Bse3DI GCAATG 2 cut(s) 691, 895
BseBI CCWGG 2 cut(s) 641, 1080
BseDI CCNNGG 3 cut(s) 351, 352, 462
BseGI GGATG 3 cut(s) 49, 1181, 1186
BseLI CCNNNNNNNGG 2 cut(s) 487, 1196
BseMI GCAATG 2 cut(s) 691, 895
BseMII CTCAG 2 cut(s) 62, 1133
BseNI ACTGG 6 cut(s) 177, 201, 320, 440, 571, 1119
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 9 cut(s) 18, 21, 24, 27, 30, 589, 617, 761, 1033
BseYI CCCAGC 1 cut(s) 883
BshFI GGCC 2 cut(s) 350, 581
BshNI GGYRCC 1 cut(s) 569
BshTI ACCGGT 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 3 cut(s) 353, 573, 656
BslFI GGGAC 2 cut(s) 245, 503
BslI CCNNNNNNNGG 2 cut(s) 487, 1196
BsmFI GGGAC 2 cut(s) 245, 503
BsnI GGCC 2 cut(s) 350, 581
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 284, 359
Bsp1720I GCTNAGC 1 cut(s) 71
BspACI CCGC 3 cut(s) 505, 854, 866
BspANI GGCC 2 cut(s) 350, 581
BspCNI CTCAG 2 cut(s) 63, 1134
BspHI TCATGA 2 cut(s) 445, 535
BspLI GGNNCC 5 cut(s) 351, 358, 571, 654, 1119
BspMAI CTGCAG 2 cut(s) 607, 1051
BspMI ACCTGC 1 cut(s) 535
BspOI GCTAGC 1 cut(s) 1017
BspPI GGATC 5 cut(s) 118, 146, 710, 1094, 1102
BspT107I GGYRCC 1 cut(s) 569
BsrDI GCAATG 2 cut(s) 691, 895
BsrFI RCCGGY 1 cut(s) 572
BsrI ACTGG 6 cut(s) 177, 201, 320, 440, 571, 1119
BssAI RCCGGY 1 cut(s) 572
BssECI CCNNGG 3 cut(s) 351, 352, 462
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 641, 1080
Bst4CI ACNGT 2 cut(s) 254, 1234
BstC8I GCNNGC 3 cut(s) 146, 180, 1015
BstDEI CTNAG 3 cut(s) 71, 1142, 1225
BstF5I GGATG 3 cut(s) 49, 1181, 1186
BstMWI GCNNNNNNNGC 6 cut(s) 12, 15, 18, 347, 1052, 1313
BstNI CCWGG 2 cut(s) 641, 1080
BstSCI CCNGG 5 cut(s) 351, 352, 639, 655, 1078
BstSFI CTRYAG 3 cut(s) 250, 603, 1047
BstV1I GCAGC 9 cut(s) 18, 21, 24, 27, 30, 589, 617, 761, 1033
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 1 cut(s) 1094
BstYI RGATCY 1 cut(s) 1094
BsuRI GGCC 2 cut(s) 350, 581
BtgZI GCGATG 1 cut(s) 567
BtsCI GGATG 3 cut(s) 49, 1181, 1186
BtsI GCAGTG 3 cut(s) 245, 1020, 1258
BtsIMutI CAGTG 5 cut(s) 170, 245, 1020, 1112, 1258
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 3 cut(s) 146, 180, 1015
CaiI CAGNNNCTG 1 cut(s) 1114
CciI TCATGA 2 cut(s) 445, 535
Cfr10I RCCGGY 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 349, 384
Cfr9I CCCGGG 1 cut(s) 352
Csp6I GTAC 6 cut(s) 211, 244, 271, 313, 514, 570
CspAI ACCGGT 1 cut(s) 572
CviAII CATG 5 cut(s) 121, 223, 446, 536, 812
CviQI GTAC 6 cut(s) 211, 244, 271, 313, 514, 570
DdeI CTNAG 3 cut(s) 71, 1142, 1225
EciI GGCGGA 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 352
EcoO109I RGGNCCY 2 cut(s) 349, 384
EcoRII CCWGG 2 cut(s) 639, 1078
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 5 cut(s) 124, 226, 449, 539, 815
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 2 cut(s) 245, 503
FatI CATG 5 cut(s) 120, 222, 445, 535, 811
FbaI TGATCA 2 cut(s) 532, 844
FokI GGATG 3 cut(s) 36, 1188, 1193
FriOI GRGCYC 1 cut(s) 359
FspBI CTAG 2 cut(s) 1010, 1014
GsaI CCCAGC 1 cut(s) 887
HaeIII GGCC 2 cut(s) 350, 581
HapII CCGG 3 cut(s) 353, 573, 656
Hin1II CATG 5 cut(s) 124, 226, 449, 539, 815
HinfI GANTC 8 cut(s) 45, 91, 104, 527, 674, 788, 833, 979
HpaII CCGG 3 cut(s) 353, 573, 656
HphI GGTGA 5 cut(s) 451, 572, 828, 864, 888
Hpy188III TCNNGA 5 cut(s) 277, 446, 536, 830, 1061
HpyAV CCTTC 6 cut(s) 28, 403, 752, 972, 1190, 1238
HpyCH4III ACNGT 2 cut(s) 254, 1234
HpyCH4IV ACGT 4 cut(s) 213, 399, 406, 999
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 15, 18, 347, 1052, 1313
HpyF3I CTNAG 3 cut(s) 71, 1142, 1225
HpySE526I ACGT 4 cut(s) 213, 399, 406, 999
Hsp92II CATG 5 cut(s) 124, 226, 449, 539, 815
KpnI GGTACC 1 cut(s) 573
Ksp22I TGATCA 2 cut(s) 532, 844
LmnI GCTCC 4 cut(s) 293, 362, 652, 1313
Lsp1109I GCAGC 9 cut(s) 18, 21, 24, 27, 30, 589, 617, 761, 1033
LweI GCATC 4 cut(s) 652, 700, 1034, 1042
MaeI CTAG 2 cut(s) 1010, 1014
MaeII ACGT 4 cut(s) 213, 399, 406, 999
MaeIII GTNAC 3 cut(s) 870, 1110, 1253
MboII GAAGA 5 cut(s) 100, 331, 434, 439, 734
MfeI CAATTG 1 cut(s) 1191
MflI RGATCY 1 cut(s) 1094
MhlI GDGCHC 2 cut(s) 284, 359
MluCI AATT 7 cut(s) 469, 778, 944, 1030, 1056, 1165, 1191
MlyI GAGTC 2 cut(s) 521, 827
MmeI TCCRAC 1 cut(s) 315
MseI TTAA 3 cut(s) 402, 699, 801
MslI CAYNNNNRTG 3 cut(s) 119, 918, 1324
MspI CCGG 3 cut(s) 353, 573, 656
MspR9I CCNGG 5 cut(s) 353, 354, 641, 657, 1080
MunI CAATTG 1 cut(s) 1191
MvaI CCWGG 2 cut(s) 641, 1080
MwoI GCNNNNNNNGC 6 cut(s) 12, 15, 18, 347, 1052, 1313
NciI CCSGG 3 cut(s) 353, 354, 657
NheI GCTAGC 1 cut(s) 1013
NlaIII CATG 5 cut(s) 124, 226, 449, 539, 815
NlaIV GGNNCC 5 cut(s) 351, 358, 571, 654, 1119
NmuCI GTSAC 3 cut(s) 870, 1110, 1253
PagI TCATGA 2 cut(s) 445, 535
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 6 cut(s) 45, 91, 104, 674, 788, 979
PinAI ACCGGT 1 cut(s) 572
PleI GAGTC 2 cut(s) 521, 827
PpsI GAGTC 2 cut(s) 521, 827
PpuMI RGGWCCY 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 639, 1078
PspFI CCCAGC 1 cut(s) 883
PspGI CCWGG 2 cut(s) 639, 1078
PspN4I GGNNCC 5 cut(s) 351, 358, 571, 654, 1119
PspPI GGNCC 2 cut(s) 349, 384
PspPPI RGGWCCY 1 cut(s) 384
PstI CTGCAG 2 cut(s) 607, 1051
PstNI CAGNNNCTG 1 cut(s) 1114
PsuI RGATCY 1 cut(s) 1094
RsaI GTAC 6 cut(s) 212, 245, 272, 314, 515, 571
RsaNI GTAC 6 cut(s) 211, 244, 271, 313, 514, 570
RseI CAYNNNNRTG 3 cut(s) 119, 918, 1324
SaqAI TTAA 3 cut(s) 402, 699, 801
Sau96I GGNCC 2 cut(s) 349, 384
SchI GAGTC 2 cut(s) 521, 827
ScrFI CCNGG 5 cut(s) 353, 354, 641, 657, 1080
SduI GDGCHC 2 cut(s) 284, 359
SfaNI GCATC 4 cut(s) 652, 700, 1034, 1042
SfcI CTRYAG 3 cut(s) 250, 603, 1047
SinI GGWCC 1 cut(s) 384
SmaI CCCGGG 1 cut(s) 354
SmiMI CAYNNNNRTG 3 cut(s) 119, 918, 1324
Sse9I AATT 7 cut(s) 469, 778, 944, 1030, 1056, 1165, 1191
SsiI CCGC 3 cut(s) 505, 854, 866
SspMI CTAG 2 cut(s) 1010, 1014
StyD4I CCNGG 5 cut(s) 351, 352, 639, 655, 1078
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 254, 1234
TaiI ACGT 4 cut(s) 216, 402, 409, 1002
TaqI TCGA 1 cut(s) 43
TasI AATT 7 cut(s) 469, 778, 944, 1030, 1056, 1165, 1191
TatI WGTACW 2 cut(s) 270, 513
TauI GCSGC 1 cut(s) 507
TfiI GAWTC 6 cut(s) 45, 91, 104, 674, 788, 979
Tru1I TTAA 3 cut(s) 402, 699, 801
Tru9I TTAA 3 cut(s) 402, 699, 801
TscAI CASTG 5 cut(s) 177, 245, 1027, 1119, 1258
TseFI GTSAC 3 cut(s) 870, 1110, 1253
TseI GCWGC 9 cut(s) 6, 9, 12, 15, 18, 602, 605, 774, 1046
Tsp45I GTSAC 3 cut(s) 870, 1110, 1253
TspDTI ATGAA 5 cut(s) 101, 434, 936, 1020, 1257
TspGWI ACGGA 1 cut(s) 1272
TspMI CCCGGG 1 cut(s) 352
TspRI CASTG 5 cut(s) 177, 245, 1027, 1119, 1258
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 1 cut(s) 469
XmaI CCCGGG 1 cut(s) 352
XspI CTAG 2 cut(s) 1010, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.