Rh1AG300700
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0020468
Physical Location & Seq
Reverse (-)
53336175 .. 53339553
3379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG300700.1

Sequence Viewer

Length: 1335 bp
ATGGACAGCAGCAGCAGCAGCCTCACATTTCCGAAGGGATTTCGATTCCATCCCACCAACGAGGAGGTGCTGAGCTACTTGGAGATGAAGAATCAGGGCAGGGATTCTGAAATCACAGCCATGATCCCCGAAATCAATGTTTGCGAGCATGAGCCTCGCGATTTACCAGCACTGGTGCTTGCACGGGGAGAACTACTGGACAGGGAGTGGTACATTGCCCTCATGTCTTGGGACAGGCAGTGGTACTTCTACAGTCGGCGTGATTACAAGTACATCAAGAGCACTCGCTCCAACAGGACTACAAGGAAAGGGTACTGGAAGATCACAGGCAAGGAACTTGCAATCAAGGCCCCGGGCTCCAAAGCTGTGATTGGGATAAAGAGGACCCTGACCTTCTACGTTAAACGTGGAGTGCCGAAACCCCAGAAGACCAACTGGGTTCTTCATGAGTTTGATCTCACCAAGGCAAATTCTGATGACCAGATAGGGGACTTTGTTCTCTGCCGCTTGAAGTACAAGTCAGACGAATCTGATCATGATAAGCAGGTCTGCGATGGAGGTGAAACTGGTACCGGTATGGCCTCCAATGTTGAAAATCAGGCTGCAGCAGAGGGTATGATTGCAGAAGCAGGAGAAAACCTGGCATTCAAGGAGCAGGGAGATGCTGTTTGGGAATCTGATGGCAATGAGCATCAACTTAAAGGCTTGCAAACTGCTCCTTGTGGTAAAGATAGGAATGATCTTACGATCTCTGTTGAAGGTCAAAATAATTGCTGCAATTCGTCTGATTCTGATATAATTAAAGAGCTACATGATAAACCAGAAAATCTGGACTCACCCTCTGATCAACCTCCGCCACCTCAACCGCAGTCACCACAAAAGCTGGGCAATGTTTCACCCACCACCAATGCCCATATTGATGAATGTCGCAAGAGGAAAGTTCAATTTGGGGATAATAACCCTTCTCCTACTAAACAGAATCATATTTCAACCAATGACGTTAATGAACTAGCTACCAACACTGCATCTAATTCTATAAATCAAGCTGCAGATGCAATTCCAGAGGGGTGTTCTCAACCAGGAGAAAATCTGGGATCTGATCCATTTCAGTCACTGGAACCACTATCAATAAACAGAGAACGGAGAGATTTTTCCCATTACAATAATTCTATTGGATGGGATGATATGCCAATTGAAGGTATTGACTCTTCTCTCGCAAAGTTCTTAGATACATTTATTGATGGAGGTAGCAGTGACGGACACAACAAAGTCGCCTATGGATTGGTAAATGATTGTTCTGCATTAGCCATTGGAGAAACACTCCAATGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

444

Amino Acids

49.29

Weight (kDa)

5.02

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 153 9.2e-31 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020468)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0361681
rosa_laevigata RLG00000027710
rosa_multiflora Rmu_sc0001034.1_g000015
rosa_roxburghii Rroxscaffold_4G00294820
rosa_rugosa Rorug01G0290600
rosa_samantha Rh1AG300700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 535
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 569
AccII CGCG 1 cut(s) 159
AciI CCGC 3 cut(s) 505, 854, 866
AclWI GGATC 3 cut(s) 118, 1094, 1102
AcsI RAATTY 1 cut(s) 469
AfaI GTAC 6 cut(s) 212, 245, 272, 314, 515, 571
AfiI CCNNNNNNNGG 2 cut(s) 487, 1196
AgeI ACCGGT 1 cut(s) 572
AgsI TTSAA 7 cut(s) 511, 593, 649, 758, 944, 990, 1196
AjnI CCWGG 2 cut(s) 639, 1078
AluBI AGCT 7 cut(s) 75, 365, 808, 883, 1013, 1046, 1332
AluI AGCT 7 cut(s) 75, 365, 808, 883, 1013, 1046, 1332
Alw21I GWGCWC 1 cut(s) 284
AlwI GGATC 3 cut(s) 118, 1094, 1102
AlwNI CAGNNNCTG 1 cut(s) 1114
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 2 cut(s) 348, 579
ApeKI GCWGC 8 cut(s) 9, 12, 15, 18, 602, 605, 774, 1046
ApoI RAATTY 1 cut(s) 469
AsiGI ACCGGT 1 cut(s) 572
Asp718I GGTACC 1 cut(s) 569
AspS9I GGNCC 2 cut(s) 349, 384
AsuC2I CCSGG 2 cut(s) 353, 354
AsuHPI GGTGA 5 cut(s) 451, 572, 828, 864, 888
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 1192, 1224
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 8 cut(s) 21, 24, 27, 30, 589, 617, 761, 1033
BccI CCATC 5 cut(s) 57, 548, 674, 1170, 1235
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciT130I CCWGG 2 cut(s) 641, 1080
BclI TGATCA 2 cut(s) 532, 844
BcnI CCSGG 2 cut(s) 353, 354
BfaI CTAG 1 cut(s) 1010
BfmI CTRYAG 3 cut(s) 250, 603, 1047
BfuAI ACCTGC 1 cut(s) 535
BisI GCNGC 9 cut(s) 10, 13, 16, 19, 505, 603, 606, 775, 1047
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 9 cut(s) 11, 14, 17, 20, 506, 604, 607, 776, 1048
Bme1390I CCNGG 4 cut(s) 353, 354, 641, 1080
Bme18I GGWCC 1 cut(s) 384
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 349, 384
BmiI GGNNCC 5 cut(s) 351, 358, 386, 571, 1119
BmrFI CCNGG 4 cut(s) 353, 354, 641, 1080
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 4 cut(s) 652, 700, 1034, 1042
BmuI ACTGGG 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 434
BplI GAGNNNNNCTC 1 cut(s) 1305
Bpu1102I GCTNAGC 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 353, 354
BsaJI CCNNGG 3 cut(s) 351, 352, 462
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 1196
Bse118I RCCGGY 1 cut(s) 572
Bse1I ACTGG 6 cut(s) 177, 201, 320, 440, 571, 1119
Bse3DI GCAATG 3 cut(s) 213, 691, 895
BseBI CCWGG 2 cut(s) 641, 1080
BseDI CCNNGG 3 cut(s) 351, 352, 462
BseGI GGATG 3 cut(s) 49, 1181, 1186
BseLI CCNNNNNNNGG 2 cut(s) 487, 1196
BseMI GCAATG 3 cut(s) 213, 691, 895
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 6 cut(s) 177, 201, 320, 440, 571, 1119
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 8 cut(s) 21, 24, 27, 30, 589, 617, 761, 1033
BseYI CCCAGC 1 cut(s) 883
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 350, 581
BshNI GGYRCC 1 cut(s) 569
BshTI ACCGGT 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 2 cut(s) 353, 573
BslFI GGGAC 2 cut(s) 245, 503
BslI CCNNNNNNNGG 2 cut(s) 487, 1196
BsmFI GGGAC 2 cut(s) 245, 503
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 2 cut(s) 350, 581
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 284, 359
Bsp143I GATC 9 cut(s) 123, 321, 454, 532, 739, 747, 844, 1094, 1099
Bsp1720I GCTNAGC 1 cut(s) 71
Bsp68I TCGCGA 1 cut(s) 159
BspACI CCGC 3 cut(s) 505, 854, 866
BspANI GGCC 2 cut(s) 350, 581
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 2 cut(s) 445, 535
BspLI GGNNCC 5 cut(s) 351, 358, 386, 571, 1119
BspMAI CTGCAG 2 cut(s) 607, 1051
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 3 cut(s) 118, 1094, 1102
BspT107I GGYRCC 1 cut(s) 569
BsrDI GCAATG 3 cut(s) 213, 691, 895
BsrFI RCCGGY 1 cut(s) 572
BsrI ACTGG 6 cut(s) 177, 201, 320, 440, 571, 1119
BssAI RCCGGY 1 cut(s) 572
BssECI CCNNGG 3 cut(s) 351, 352, 462
BssMI GATC 9 cut(s) 123, 321, 454, 532, 739, 747, 844, 1094, 1099
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 641, 1080
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 1213
BstC8I GCNNGC 3 cut(s) 146, 180, 707
BstDEI CTNAG 2 cut(s) 71, 1225
BstF5I GGATG 3 cut(s) 49, 1181, 1186
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 9 cut(s) 126, 324, 457, 535, 742, 750, 847, 1097, 1102
BstMBI GATC 9 cut(s) 123, 321, 454, 532, 739, 747, 844, 1094, 1099
BstMWI GCNNNNNNNGC 4 cut(s) 15, 18, 347, 1052
BstNI CCWGG 2 cut(s) 641, 1080
BstSCI CCNGG 4 cut(s) 351, 352, 639, 1078
BstSFI CTRYAG 3 cut(s) 250, 603, 1047
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 8 cut(s) 21, 24, 27, 30, 589, 617, 761, 1033
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 1 cut(s) 1094
BstYI RGATCY 1 cut(s) 1094
BsuRI GGCC 2 cut(s) 350, 581
BtgZI GCGATG 1 cut(s) 567
BtsCI GGATG 3 cut(s) 49, 1181, 1186
BtsI GCAGTG 3 cut(s) 245, 1020, 1258
BtsIMutI CAGTG 5 cut(s) 170, 245, 1020, 1112, 1258
BtuMI TCGCGA 1 cut(s) 159
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 3 cut(s) 146, 180, 707
CaiI CAGNNNCTG 1 cut(s) 1114
CciI TCATGA 2 cut(s) 445, 535
Cfr10I RCCGGY 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 349, 384
Cfr9I CCCGGG 1 cut(s) 352
Csp6I GTAC 6 cut(s) 211, 244, 271, 313, 514, 570
CspAI ACCGGT 1 cut(s) 572
CviAII CATG 6 cut(s) 121, 149, 223, 446, 536, 812
CviQI GTAC 6 cut(s) 211, 244, 271, 313, 514, 570
DdeI CTNAG 2 cut(s) 71, 1225
DpnI GATC 9 cut(s) 125, 323, 456, 534, 741, 749, 846, 1096, 1101
DpnII GATC 9 cut(s) 123, 321, 454, 532, 739, 747, 844, 1094, 1099
Eam1104I CTCTTC 1 cut(s) 1213
EarI CTCTTC 1 cut(s) 1213
EciI GGCGGA 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 352
EcoO109I RGGNCCY 2 cut(s) 349, 384
EcoRII CCWGG 2 cut(s) 639, 1078
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 6 cut(s) 124, 152, 226, 449, 539, 815
FaqI GGGAC 2 cut(s) 245, 503
FatI CATG 6 cut(s) 120, 148, 222, 445, 535, 811
FbaI TGATCA 2 cut(s) 532, 844
Fnu4HI GCNGC 9 cut(s) 10, 13, 16, 19, 505, 603, 606, 775, 1047
FokI GGATG 3 cut(s) 36, 1188, 1193
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 9 cut(s) 10, 13, 16, 19, 505, 603, 606, 775, 1047
FspBI CTAG 1 cut(s) 1010
GluI GCNGC 9 cut(s) 10, 13, 16, 19, 505, 603, 606, 775, 1047
GsaI CCCAGC 1 cut(s) 887
HaeIII GGCC 2 cut(s) 350, 581
HapII CCGG 2 cut(s) 353, 573
Hin1II CATG 6 cut(s) 124, 152, 226, 449, 539, 815
HinfI GANTC 9 cut(s) 45, 91, 104, 527, 674, 788, 833, 979, 1205
HpaII CCGG 2 cut(s) 353, 573
HphI GGTGA 5 cut(s) 451, 572, 828, 864, 888
Hpy188III TCNNGA 6 cut(s) 158, 277, 446, 536, 830, 1061
HpyAV CCTTC 5 cut(s) 28, 403, 752, 972, 1190
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 3 cut(s) 399, 406, 999
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 18, 347, 1052
HpyF3I CTNAG 2 cut(s) 71, 1225
HpySE526I ACGT 3 cut(s) 399, 406, 999
Hsp92II CATG 6 cut(s) 124, 152, 226, 449, 539, 815
KpnI GGTACC 1 cut(s) 573
Ksp22I TGATCA 2 cut(s) 532, 844
Kzo9I GATC 9 cut(s) 123, 321, 454, 532, 739, 747, 844, 1094, 1099
LmnI GCTCC 4 cut(s) 293, 362, 652, 721
Lsp1109I GCAGC 8 cut(s) 21, 24, 27, 30, 589, 617, 761, 1033
LweI GCATC 4 cut(s) 652, 700, 1034, 1042
MaeI CTAG 1 cut(s) 1010
MaeII ACGT 3 cut(s) 399, 406, 999
MaeIII GTNAC 3 cut(s) 870, 1110, 1253
MalI GATC 9 cut(s) 125, 323, 456, 534, 741, 749, 846, 1096, 1101
MboI GATC 9 cut(s) 123, 321, 454, 532, 739, 747, 844, 1094, 1099
MboII GAAGA 5 cut(s) 100, 331, 434, 439, 1200
MfeI CAATTG 1 cut(s) 1191
MflI RGATCY 1 cut(s) 1094
MhlI GDGCHC 2 cut(s) 284, 359
MluCI AATT 9 cut(s) 469, 769, 778, 798, 944, 1030, 1056, 1165, 1191
MlyI GAGTC 2 cut(s) 827, 1199
MmeI TCCRAC 1 cut(s) 315
MseI TTAA 4 cut(s) 402, 699, 801, 1002
MslI CAYNNNNRTG 3 cut(s) 119, 918, 1324
MspI CCGG 2 cut(s) 353, 573
MspR9I CCNGG 4 cut(s) 353, 354, 641, 1080
MunI CAATTG 1 cut(s) 1191
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 2 cut(s) 641, 1080
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 4 cut(s) 15, 18, 347, 1052
NciI CCSGG 2 cut(s) 353, 354
NdeII GATC 9 cut(s) 123, 321, 454, 532, 739, 747, 844, 1094, 1099
NlaIII CATG 6 cut(s) 124, 152, 226, 449, 539, 815
NlaIV GGNNCC 5 cut(s) 351, 358, 386, 571, 1119
NmuCI GTSAC 3 cut(s) 870, 1110, 1253
NruI TCGCGA 1 cut(s) 159
PagI TCATGA 2 cut(s) 445, 535
PctI GAATGC 1 cut(s) 644
PfeI GAWTC 7 cut(s) 45, 91, 104, 527, 674, 788, 979
PinAI ACCGGT 1 cut(s) 572
PkrI GCNGC 9 cut(s) 11, 14, 17, 20, 506, 604, 607, 776, 1048
PleI GAGTC 2 cut(s) 827, 1199
PpsI GAGTC 2 cut(s) 827, 1199
PpuMI RGGWCCY 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 639, 1078
PspFI CCCAGC 1 cut(s) 883
PspGI CCWGG 2 cut(s) 639, 1078
PspN4I GGNNCC 5 cut(s) 351, 358, 386, 571, 1119
PspPI GGNCC 2 cut(s) 349, 384
PspPPI RGGWCCY 1 cut(s) 384
PstI CTGCAG 2 cut(s) 607, 1051
PstNI CAGNNNCTG 1 cut(s) 1114
PsuI RGATCY 1 cut(s) 1094
RruI TCGCGA 1 cut(s) 159
RsaI GTAC 6 cut(s) 212, 245, 272, 314, 515, 571
RsaNI GTAC 6 cut(s) 211, 244, 271, 313, 514, 570
RseI CAYNNNNRTG 3 cut(s) 119, 918, 1324
SaqAI TTAA 4 cut(s) 402, 699, 801, 1002
SatI GCNGC 9 cut(s) 10, 13, 16, 19, 505, 603, 606, 775, 1047
Sau3AI GATC 9 cut(s) 123, 321, 454, 532, 739, 747, 844, 1094, 1099
Sau96I GGNCC 2 cut(s) 349, 384
SchI GAGTC 2 cut(s) 827, 1199
ScrFI CCNGG 4 cut(s) 353, 354, 641, 1080
SduI GDGCHC 2 cut(s) 284, 359
SfaNI GCATC 4 cut(s) 652, 700, 1034, 1042
SfcI CTRYAG 3 cut(s) 250, 603, 1047
SinI GGWCC 1 cut(s) 384
SmaI CCCGGG 1 cut(s) 354
SmiMI CAYNNNNRTG 3 cut(s) 119, 918, 1324
Sse9I AATT 9 cut(s) 469, 769, 778, 798, 944, 1030, 1056, 1165, 1191
SsiI CCGC 3 cut(s) 505, 854, 866
SspMI CTAG 1 cut(s) 1010
StyD4I CCNGG 4 cut(s) 351, 352, 639, 1078
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 3 cut(s) 402, 409, 1002
TaqI TCGA 1 cut(s) 43
TasI AATT 9 cut(s) 469, 769, 778, 798, 944, 1030, 1056, 1165, 1191
TatI WGTACW 2 cut(s) 270, 513
TauI GCSGC 1 cut(s) 507
TfiI GAWTC 7 cut(s) 45, 91, 104, 527, 674, 788, 979
Tru1I TTAA 4 cut(s) 402, 699, 801, 1002
Tru9I TTAA 4 cut(s) 402, 699, 801, 1002
TscAI CASTG 5 cut(s) 177, 245, 1027, 1119, 1258
TseFI GTSAC 3 cut(s) 870, 1110, 1253
TseI GCWGC 8 cut(s) 9, 12, 15, 18, 602, 605, 774, 1046
Tsp45I GTSAC 3 cut(s) 870, 1110, 1253
TspDTI ATGAA 4 cut(s) 101, 434, 936, 1020
TspGWI ACGGA 2 cut(s) 1156, 1272
TspMI CCCGGG 1 cut(s) 352
TspRI CASTG 5 cut(s) 177, 245, 1027, 1119, 1258
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 1 cut(s) 469
XmaI CCCGGG 1 cut(s) 352
XspI CTAG 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.