Rroxscaffold_4G00294820
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0020468
Physical Location & Seq
Forward (+)
14780820 .. 14783903
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294820.1

Sequence Viewer

Length: 1329 bp
ATGGACAGCAGCAGCAGCCTCACAATTCCGAAGGGATTTCGATTCCATCCCACCAACGAGGAGGTGCTGAGCTACTTGGAGATGAAAAATCAGGGCAGGGATTCTGAAATCACAGCCATGATGCCCGAAATCAATGTTTGCAGGCACGAGCCTTACGATATACCAGCACTGGTGCTTGCACGGGGAGAACTACTGGACAGGGAGTGGTACATGATGGCAGAGTCTTGGGACAGGCAGTGGTACTTTTACAGTCGGCGTGATTACAAGTACATCAAGAGCACTCGCTCCAACAGGACTACAAGGGAAGGGTACTGGAAGATCACAGGCAAGGACAGGGCAATCAAGGCCCCAGGCTCCAAAGCTGTGATTGGGACAAAGAGGACGTTGACCTTCTACGTTAAACGTGGAGTGCCGAAACCCCAGAAGACCAACTGGGTTCTTCATGAGTTTGATCTCACCAAGGCAAATTCTGATGACCAGATAGGGGCCTTTGTTCTCTGCCGCTTGAAGTGCAAGGCAGACGAATCTGATCATGATAAGCAGGTCTGTGATGGAGGTGAAACTGGTACCGGTATGGCCTCCAATGTTGAAAATCAGGCTGCAGCAGAGGGTATGATTGCAGAAGCAGGAGAAAACCTGGCAATCAAGGAGCCGGGAGATGCTGTTTGGGAATCTGATGGCAATGAGCATCAACTTAAAGGATTGCAAACTGATACTTGTGGTAAAAATAGGAATGATCTTCCGATCTCTGTTGAAGGTCAAACAAATAGCTACTATTCGTCTGATTCTGATATGATTGATGAGCTACATGATGAGCCAGAAAATCTGAAATCACCCTTTGATCAACCTCCGCCACCTCAACCGCAGTCACCAAAAAAGCTGGGCAGTGTTTCACACACCACCAATGCCCATACTGATGAATGTCGCAAGAGGAAAGATCAATTTGGGGATAATAACCCTTCTCCTAAGCGGAATCATATTTCAACCAATGACGTTGATGAACTAGCTAGCAACACTGCATATAATTCTGAAAATCAAGTTGCAGATGGGATTCCAGAGGGTGGTTCTCAACCAGGAGAAAATCTGGGATCTGATCTATTCCAGTCACTGGAACCACTATCAATAAACAGAGAACTGAGAGATTTTTCCCATTACAATAATTCTATTGGATGGGATGATATGCCAATTGAAGGTATTGACTCTTCTCTCGCAAAGTTCTTAGATACATTTACTGATGAAGGTAGCAGTGACGGACACAACAAAGTCGCCTATGGATTGGTAAATGATTATTCTGCATTAGCCATTGGAGCAACACTCCAATGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

442

Amino Acids

49.31

Weight (kDa)

4.92

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 152 4.8e-30 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020468)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0361681
rosa_laevigata RLG00000027710
rosa_multiflora Rmu_sc0001034.1_g000015
rosa_roxburghii Rroxscaffold_4G00294820
rosa_rugosa Rorug01G0290600
rosa_samantha Rh1AG300700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 532
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 1 cut(s) 566
AccB7I CCANNNNNTGG 2 cut(s) 1061, 1108
AciI CCGC 4 cut(s) 502, 851, 863, 970
AclWI GGATC 1 cut(s) 1096
AcsI RAATTY 1 cut(s) 466
AfaI GTAC 5 cut(s) 209, 242, 269, 311, 568
AfiI CCNNNNNNNGG 4 cut(s) 484, 1061, 1108, 1190
AgeI ACCGGT 1 cut(s) 569
AgsI TTSAA 5 cut(s) 508, 590, 755, 984, 1190
AjnI CCWGG 3 cut(s) 349, 636, 1072
AluBI AGCT 7 cut(s) 72, 362, 771, 805, 880, 1007, 1326
AluI AGCT 7 cut(s) 72, 362, 771, 805, 880, 1007, 1326
Alw21I GWGCWC 1 cut(s) 281
AlwI GGATC 1 cut(s) 1096
AlwNI CAGNNNCTG 1 cut(s) 1108
AoxI GGCC 3 cut(s) 345, 486, 576
ApeKI GCWGC 5 cut(s) 9, 12, 15, 599, 602
ApoI RAATTY 1 cut(s) 466
AsiGI ACCGGT 1 cut(s) 569
Asp718I GGTACC 1 cut(s) 566
AspS9I GGNCC 2 cut(s) 346, 486
AsuC2I CCSGG 1 cut(s) 654
AsuHPI GGTGA 4 cut(s) 448, 569, 825, 861
AsuNHI GCTAGC 1 cut(s) 1007
BanI GGYRCC 1 cut(s) 566
BarI GAAGNNNNNNTAC 2 cut(s) 1186, 1218
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 5 cut(s) 21, 24, 27, 586, 614
BccI CCATC 6 cut(s) 54, 208, 545, 671, 1040, 1164
BciT130I CCWGG 3 cut(s) 351, 638, 1074
BclI TGATCA 2 cut(s) 529, 841
BcnI CCSGG 1 cut(s) 654
BfaI CTAG 2 cut(s) 1004, 1008
BfmI CTRYAG 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 532
BisI GCNGC 6 cut(s) 10, 13, 16, 502, 600, 603
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 6 cut(s) 11, 14, 17, 503, 601, 604
Bme1390I CCNGG 4 cut(s) 351, 638, 654, 1074
BmgT120I GGNCC 2 cut(s) 346, 486
BmiI GGNNCC 6 cut(s) 348, 355, 487, 568, 651, 1113
BmrFI CCNGG 4 cut(s) 351, 638, 654, 1074
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 3 cut(s) 111, 649, 697
BmtI GCTAGC 1 cut(s) 1011
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 431
BplI GAGNNNNNCTC 1 cut(s) 1299
Bpu10I CCTNAGC 1 cut(s) 966
Bpu1102I GCTNAGC 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 654
BsaJI CCNNGG 2 cut(s) 349, 459
BsaWI WCCGGW 1 cut(s) 569
BsaXI ACNNNNNCTCC 2 cut(s) 648, 678
Bsc4I CCNNNNNNNGG 4 cut(s) 484, 1061, 1108, 1190
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 7 cut(s) 174, 198, 317, 437, 568, 1102, 1113
Bse3DI GCAATG 1 cut(s) 688
BseBI CCWGG 3 cut(s) 351, 638, 1074
BseDI CCNNGG 2 cut(s) 349, 459
BseGI GGATG 3 cut(s) 46, 1175, 1180
BseLI CCNNNNNNNGG 4 cut(s) 484, 1061, 1108, 1190
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 2 cut(s) 59, 1127
BseNI ACTGG 7 cut(s) 174, 198, 317, 437, 568, 1102, 1113
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 5 cut(s) 21, 24, 27, 586, 614
BseYI CCCAGC 1 cut(s) 880
BshFI GGCC 3 cut(s) 347, 488, 578
BshNI GGYRCC 1 cut(s) 566
BshTI ACCGGT 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 281
BsiSI CCGG 2 cut(s) 570, 653
BslFI GGGAC 2 cut(s) 242, 385
BslI CCNNNNNNNGG 4 cut(s) 484, 1061, 1108, 1190
BsmFI GGGAC 2 cut(s) 242, 385
BsnI GGCC 3 cut(s) 347, 488, 578
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 9 cut(s) 318, 451, 529, 736, 744, 841, 937, 1088, 1093
Bsp1720I GCTNAGC 1 cut(s) 68
BspACI CCGC 4 cut(s) 502, 851, 863, 970
BspANI GGCC 3 cut(s) 347, 488, 578
BspCNI CTCAG 2 cut(s) 60, 1128
BspHI TCATGA 2 cut(s) 442, 532
BspLI GGNNCC 6 cut(s) 348, 355, 487, 568, 651, 1113
BspMAI CTGCAG 1 cut(s) 604
BspMI ACCTGC 1 cut(s) 532
BspOI GCTAGC 1 cut(s) 1011
BspPI GGATC 1 cut(s) 1096
BspT107I GGYRCC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 688
BsrFI RCCGGY 1 cut(s) 569
BsrI ACTGG 7 cut(s) 174, 198, 317, 437, 568, 1102, 1113
BssAI RCCGGY 1 cut(s) 569
BssECI CCNNGG 2 cut(s) 349, 459
BssMI GATC 9 cut(s) 318, 451, 529, 736, 744, 841, 937, 1088, 1093
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 3 cut(s) 351, 638, 1074
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 1207
BstC8I GCNNGC 3 cut(s) 143, 177, 1009
BstDEI CTNAG 4 cut(s) 68, 966, 1136, 1219
BstF5I GGATG 3 cut(s) 46, 1175, 1180
BstKTI GATC 9 cut(s) 321, 454, 532, 739, 747, 844, 940, 1091, 1096
BstMBI GATC 9 cut(s) 318, 451, 529, 736, 744, 841, 937, 1088, 1093
BstMWI GCNNNNNNNGC 4 cut(s) 15, 344, 510, 1307
BstNI CCWGG 3 cut(s) 351, 638, 1074
BstSCI CCNGG 4 cut(s) 349, 636, 652, 1072
BstSFI CTRYAG 1 cut(s) 600
BstV1I GCAGC 5 cut(s) 21, 24, 27, 586, 614
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 1088
BstYI RGATCY 1 cut(s) 1088
BsuRI GGCC 3 cut(s) 347, 488, 578
BtsCI GGATG 3 cut(s) 46, 1175, 1180
BtsI GCAGTG 4 cut(s) 242, 892, 1014, 1252
BtsIMutI CAGTG 6 cut(s) 167, 242, 892, 1014, 1106, 1252
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 3 cut(s) 143, 177, 1009
CaiI CAGNNNCTG 1 cut(s) 1108
CciI TCATGA 2 cut(s) 442, 532
Cfr10I RCCGGY 1 cut(s) 569
Cfr13I GGNCC 2 cut(s) 346, 486
Csp6I GTAC 5 cut(s) 208, 241, 268, 310, 567
CspAI ACCGGT 1 cut(s) 569
CviAII CATG 5 cut(s) 118, 211, 443, 533, 809
CviQI GTAC 5 cut(s) 208, 241, 268, 310, 567
DdeI CTNAG 4 cut(s) 68, 966, 1136, 1219
DpnI GATC 9 cut(s) 320, 453, 531, 738, 746, 843, 939, 1090, 1095
DpnII GATC 9 cut(s) 318, 451, 529, 736, 744, 841, 937, 1088, 1093
Eam1104I CTCTTC 1 cut(s) 1207
EarI CTCTTC 1 cut(s) 1207
EciI GGCGGA 1 cut(s) 840
Eco130I CCWWGG 1 cut(s) 459
EcoO109I RGGNCCY 2 cut(s) 346, 486
EcoRII CCWGG 3 cut(s) 349, 636, 1072
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 5 cut(s) 121, 214, 446, 536, 812
FaqI GGGAC 2 cut(s) 242, 385
FatI CATG 5 cut(s) 117, 210, 442, 532, 808
FbaI TGATCA 2 cut(s) 529, 841
Fnu4HI GCNGC 6 cut(s) 10, 13, 16, 502, 600, 603
FokI GGATG 3 cut(s) 33, 1182, 1187
Fsp4HI GCNGC 6 cut(s) 10, 13, 16, 502, 600, 603
FspBI CTAG 2 cut(s) 1004, 1008
GluI GCNGC 6 cut(s) 10, 13, 16, 502, 600, 603
GsaI CCCAGC 1 cut(s) 884
HaeIII GGCC 3 cut(s) 347, 488, 578
HapII CCGG 2 cut(s) 570, 653
Hin1II CATG 5 cut(s) 121, 214, 446, 536, 812
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 9 cut(s) 42, 101, 221, 524, 671, 785, 973, 1051, 1199
HpaII CCGG 2 cut(s) 570, 653
HphI GGTGA 4 cut(s) 448, 569, 825, 861
Hpy166II GTNNAC 1 cut(s) 387
Hpy188III TCNNGA 4 cut(s) 274, 443, 533, 1055
Hpy8I GTNNAC 1 cut(s) 387
HpyAV CCTTC 7 cut(s) 25, 299, 400, 749, 969, 1184, 1232
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 4 cut(s) 383, 396, 403, 993
HpyCH4V TGCA 9 cut(s) 141, 179, 513, 602, 620, 706, 1019, 1043, 1295
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 344, 510, 1307
HpyF3I CTNAG 4 cut(s) 68, 966, 1136, 1219
HpySE526I ACGT 4 cut(s) 383, 396, 403, 993
Hsp92II CATG 5 cut(s) 121, 214, 446, 536, 812
KpnI GGTACC 1 cut(s) 570
Ksp22I TGATCA 2 cut(s) 529, 841
Kzo9I GATC 9 cut(s) 318, 451, 529, 736, 744, 841, 937, 1088, 1093
LmnI GCTCC 4 cut(s) 290, 359, 649, 1307
Lsp1109I GCAGC 5 cut(s) 21, 24, 27, 586, 614
LweI GCATC 3 cut(s) 111, 649, 697
MaeI CTAG 2 cut(s) 1004, 1008
MaeII ACGT 4 cut(s) 383, 396, 403, 993
MaeIII GTNAC 3 cut(s) 867, 1104, 1247
MalI GATC 9 cut(s) 320, 453, 531, 738, 746, 843, 939, 1090, 1095
MboI GATC 9 cut(s) 318, 451, 529, 736, 744, 841, 937, 1088, 1093
MboII GAAGA 5 cut(s) 328, 431, 436, 731, 1194
MfeI CAATTG 1 cut(s) 1185
MflI RGATCY 1 cut(s) 1088
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 6 cut(s) 24, 466, 941, 1024, 1159, 1185
MlyI GAGTC 2 cut(s) 230, 1193
MmeI TCCRAC 1 cut(s) 312
MseI TTAA 2 cut(s) 399, 696
MslI CAYNNNNRTG 3 cut(s) 116, 915, 1318
MspI CCGG 2 cut(s) 570, 653
MspR9I CCNGG 4 cut(s) 351, 638, 654, 1074
MunI CAATTG 1 cut(s) 1185
MvaI CCWGG 3 cut(s) 351, 638, 1074
MwoI GCNNNNNNNGC 4 cut(s) 15, 344, 510, 1307
NciI CCSGG 1 cut(s) 654
NdeII GATC 9 cut(s) 318, 451, 529, 736, 744, 841, 937, 1088, 1093
NheI GCTAGC 1 cut(s) 1007
NlaIII CATG 5 cut(s) 121, 214, 446, 536, 812
NlaIV GGNNCC 6 cut(s) 348, 355, 487, 568, 651, 1113
NmuCI GTSAC 3 cut(s) 867, 1104, 1247
PagI TCATGA 2 cut(s) 442, 532
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 7 cut(s) 42, 101, 524, 671, 785, 973, 1051
PflMI CCANNNNNTGG 2 cut(s) 1061, 1108
PinAI ACCGGT 1 cut(s) 569
PkrI GCNGC 6 cut(s) 11, 14, 17, 503, 601, 604
PleI GAGTC 2 cut(s) 229, 1193
PpsI GAGTC 2 cut(s) 229, 1193
Psp6I CCWGG 3 cut(s) 349, 636, 1072
PspFI CCCAGC 1 cut(s) 880
PspGI CCWGG 3 cut(s) 349, 636, 1072
PspN4I GGNNCC 6 cut(s) 348, 355, 487, 568, 651, 1113
PspPI GGNCC 2 cut(s) 346, 486
PstI CTGCAG 1 cut(s) 604
PstNI CAGNNNCTG 1 cut(s) 1108
PsuI RGATCY 1 cut(s) 1088
RsaI GTAC 5 cut(s) 209, 242, 269, 311, 568
RsaNI GTAC 5 cut(s) 208, 241, 268, 310, 567
RseI CAYNNNNRTG 3 cut(s) 116, 915, 1318
SaqAI TTAA 2 cut(s) 399, 696
SatI GCNGC 6 cut(s) 10, 13, 16, 502, 600, 603
Sau3AI GATC 9 cut(s) 318, 451, 529, 736, 744, 841, 937, 1088, 1093
Sau96I GGNCC 2 cut(s) 346, 486
SchI GAGTC 2 cut(s) 230, 1193
ScrFI CCNGG 4 cut(s) 351, 638, 654, 1074
SduI GDGCHC 1 cut(s) 281
SfaNI GCATC 3 cut(s) 111, 649, 697
SfcI CTRYAG 1 cut(s) 600
SmiMI CAYNNNNRTG 3 cut(s) 116, 915, 1318
Sse9I AATT 6 cut(s) 24, 466, 941, 1024, 1159, 1185
SsiI CCGC 4 cut(s) 502, 851, 863, 970
SspMI CTAG 2 cut(s) 1004, 1008
StyD4I CCNGG 4 cut(s) 349, 636, 652, 1072
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 4 cut(s) 386, 399, 406, 996
TaqI TCGA 1 cut(s) 40
TasI AATT 6 cut(s) 24, 466, 941, 1024, 1159, 1185
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 7 cut(s) 42, 101, 524, 671, 785, 973, 1051
Tru1I TTAA 2 cut(s) 399, 696
Tru9I TTAA 2 cut(s) 399, 696
TscAI CASTG 6 cut(s) 174, 242, 892, 1021, 1113, 1252
TseFI GTSAC 3 cut(s) 867, 1104, 1247
TseI GCWGC 5 cut(s) 9, 12, 15, 599, 602
Tsp45I GTSAC 3 cut(s) 867, 1104, 1247
TspDTI ATGAA 5 cut(s) 98, 431, 933, 1014, 1251
TspGWI ACGGA 1 cut(s) 1266
TspRI CASTG 6 cut(s) 174, 242, 892, 1021, 1113, 1252
Van91I CCANNNNNTGG 2 cut(s) 1061, 1108
XapI RAATTY 1 cut(s) 466
XspI CTAG 2 cut(s) 1004, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.