RLG00000027710
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0020468
Physical Location & Seq
Forward (+)
14229532 .. 14230879
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027710

Sequence Viewer

Length: 1089 bp
ATGGACAGCAGCAGCAGCCTCACAATTCCGAAGGGATTTCGATTCCATCCCACCAACGAGGAGGTGCTGAGCTACTTGGAGATGAAGAATCAGGGCAGGGATTCTGAAATCACAGACATCATCCCCGAAATCAATGTCTGCAGGCACGAGCCTGACGATTTACCAGCACTGGTGTTTGCACGGGGAGACCTACTGGACAGGGAGTGGTACGTGAGGGCAGAGTCTTGCGACAGGCAGTGGTACTTGTACAGTCGGCGTGATTACAAGTACATCAAGAGCACTCGCTCCAACAGGACTACAGGGAAAGGGTACTGGAAGATCACAGGCAAGGAGCGCGCAATCAAGGCCCCAGGCTCCAAAGCTGTGATTGGGAGAAAGAGGACCTTGACATTCTACATTAAACGTGGAGTGCCGAAACCCCAGAAGACCAACTGGGTTCTTCATGAGTATTATCTCACCAAGGCAAATTCTGATGAGCAGATAGGGGACTTTGTTCTCTGCCGCTTGAAGCTCAAGTCAGACGAATCTGATCATGATAAGCAGGTCTGCGATGGAGGTGAAACTGGTACCGGTATGGCCTCCAATGTTGAAAATCAGGCTGCAGCAGAGGGTATGATTGCAGAAGCAGGAGATAACCTGGCATTCAAGGAGCCGGGAGATGCTGTTTGGGAATCTGATGGCAATGAGCATCAACTTAAAGGCTTGCAAACTGATCGTTACGGCAAAGATAGGAATGATCTTCCGATCTCTGTTGAAGGTCAAACTAATATCTGCAATTCGTCTGATTCTGATAGGATTGAAGAGCGACGTGATGAGCCAGCAAATCTGGACTCACTCCTTGATCAACCTCCGCCACCTCAACCGCAGTCACCAAAAAAGCTGGGCAATGTTTCACACACCACCAATGCCCATATTGATGAATGTCGCAAGAGGAAAGATCAATTTGGGGATAATAACCCTTCTCCTACTAAAAAGAATCATATTTCAACCAATGACGTTGATGAACTAGCTAGCAACAATGCATCTAATTCTAAAAATCAAGCTGCAGATGTAATTCCAGAGCAGCACCAGAATTGTATCCAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

363

Amino Acids

40.86

Weight (kDa)

5.69

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 151 3.9e-31 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020468)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0361681
rosa_laevigata RLG00000027710
rosa_multiflora Rmu_sc0001034.1_g000015
rosa_roxburghii Rroxscaffold_4G00294820
rosa_rugosa Rorug01G0290600
rosa_samantha Rh1AG300700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 532
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 1 cut(s) 566
AccII CGCG 1 cut(s) 336
AciI CCGC 3 cut(s) 502, 851, 863
AcsI RAATTY 1 cut(s) 466
AfaI GTAC 6 cut(s) 209, 242, 248, 269, 311, 568
AgeI ACCGGT 1 cut(s) 569
AgsI TTSAA 6 cut(s) 508, 590, 646, 755, 800, 987
AjiI CACGTC 1 cut(s) 809
AjnI CCWGG 2 cut(s) 349, 636
AluBI AGCT 6 cut(s) 72, 362, 511, 880, 1010, 1043
AluI AGCT 6 cut(s) 72, 362, 511, 880, 1010, 1043
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 1 cut(s) 180
AoxI GGCC 2 cut(s) 345, 576
ApeKI GCWGC 7 cut(s) 9, 12, 15, 599, 602, 1043, 1063
ApoI RAATTY 1 cut(s) 466
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AsiGI ACCGGT 1 cut(s) 569
Asp718I GGTACC 1 cut(s) 566
AspLEI GCGC 2 cut(s) 336, 338
AspS9I GGNCC 2 cut(s) 346, 381
AsuC2I CCSGG 1 cut(s) 654
AsuHPI GGTGA 3 cut(s) 448, 569, 861
AsuNHI GCTAGC 1 cut(s) 1010
AvaII GGWCC 1 cut(s) 381
BanI GGYRCC 1 cut(s) 566
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 7 cut(s) 21, 24, 27, 586, 614, 1030, 1075
BccI CCATC 3 cut(s) 54, 545, 671
BceAI ACGGC 1 cut(s) 736
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 2 cut(s) 351, 638
BciVI GTATCC 1 cut(s) 1088
BclI TGATCA 2 cut(s) 529, 841
BcnI CCSGG 1 cut(s) 654
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 2 cut(s) 1007, 1011
BfmI CTRYAG 4 cut(s) 139, 297, 600, 1044
BfuAI ACCTGC 1 cut(s) 532
BfuI GTATCC 1 cut(s) 1088
BisI GCNGC 8 cut(s) 10, 13, 16, 502, 600, 603, 1044, 1064
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 8 cut(s) 11, 14, 17, 503, 601, 604, 1045, 1065
Bme1390I CCNGG 3 cut(s) 351, 638, 654
Bme18I GGWCC 1 cut(s) 381
BmgBI CACGTC 1 cut(s) 809
BmgT120I GGNCC 2 cut(s) 346, 381
BmiI GGNNCC 4 cut(s) 348, 355, 568, 651
BmrFI CCNGG 3 cut(s) 351, 638, 654
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 3 cut(s) 649, 697, 1031
BmtI GCTAGC 1 cut(s) 1014
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 431
Bpu1102I GCTNAGC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 1 cut(s) 654
BsaAI YACGTR 1 cut(s) 211
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 349, 459
BsaWI WCCGGW 1 cut(s) 569
BsaXI ACNNNNNCTCC 2 cut(s) 648, 678
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 5 cut(s) 174, 198, 317, 437, 568
Bse3DI GCAATG 2 cut(s) 688, 892
BseBI CCWGG 2 cut(s) 351, 638
BseDI CCNNGG 2 cut(s) 349, 459
BseGI GGATG 2 cut(s) 46, 120
BseMI GCAATG 2 cut(s) 688, 892
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 5 cut(s) 174, 198, 317, 437, 568
BsePI GCGCGC 1 cut(s) 334
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 7 cut(s) 21, 24, 27, 586, 614, 1030, 1075
BseYI CCCAGC 1 cut(s) 880
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 347, 578
BshNI GGYRCC 1 cut(s) 566
BshTI ACCGGT 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 281
BsiSI CCGG 2 cut(s) 570, 653
BslFI GGGAC 1 cut(s) 500
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 2 cut(s) 347, 578
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 281
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 7 cut(s) 318, 529, 712, 736, 744, 841, 937
Bsp1720I GCTNAGC 1 cut(s) 68
BspACI CCGC 3 cut(s) 502, 851, 863
BspANI GGCC 2 cut(s) 347, 578
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 1 cut(s) 336
BspHI TCATGA 2 cut(s) 442, 532
BspLI GGNNCC 4 cut(s) 348, 355, 568, 651
BspMAI CTGCAG 3 cut(s) 143, 604, 1048
BspMI ACCTGC 1 cut(s) 532
BspOI GCTAGC 1 cut(s) 1014
BspQI GCTCTTC 1 cut(s) 795
BspT107I GGYRCC 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 180
BsrDI GCAATG 2 cut(s) 688, 892
BsrFI RCCGGY 1 cut(s) 569
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 5 cut(s) 174, 198, 317, 437, 568
BssAI RCCGGY 1 cut(s) 569
BssECI CCNNGG 2 cut(s) 349, 459
BssHII GCGCGC 1 cut(s) 334
BssMI GATC 7 cut(s) 318, 529, 712, 736, 744, 841, 937
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 2 cut(s) 351, 638
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 795
BstAUI TGTACA 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 5 cut(s) 143, 336, 704, 819, 1012
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 46, 120
BstFNI CGCG 1 cut(s) 336
BstHHI GCGC 2 cut(s) 336, 338
BstKTI GATC 7 cut(s) 321, 532, 715, 739, 747, 844, 940
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 7 cut(s) 318, 529, 712, 736, 744, 841, 937
BstMWI GCNNNNNNNGC 3 cut(s) 15, 333, 344
BstNI CCWGG 2 cut(s) 351, 638
BstSCI CCNGG 3 cut(s) 349, 636, 652
BstSFI CTRYAG 4 cut(s) 139, 297, 600, 1044
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 7 cut(s) 21, 24, 27, 586, 614, 1030, 1075
BstV2I GAAGAC 1 cut(s) 431
BsuI GTATCC 1 cut(s) 1088
BsuRI GGCC 2 cut(s) 347, 578
BtgZI GCGATG 1 cut(s) 564
BtrI CACGTC 1 cut(s) 809
BtsCI GGATG 2 cut(s) 46, 120
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 167, 242
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 5 cut(s) 143, 336, 704, 819, 1012
CciI TCATGA 2 cut(s) 442, 532
CfoI GCGC 2 cut(s) 336, 338
Cfr10I RCCGGY 1 cut(s) 569
Cfr13I GGNCC 2 cut(s) 346, 381
Csp6I GTAC 6 cut(s) 208, 241, 247, 268, 310, 567
CspAI ACCGGT 1 cut(s) 569
CviAII CATG 2 cut(s) 443, 533
CviQI GTAC 6 cut(s) 208, 241, 247, 268, 310, 567
DdeI CTNAG 1 cut(s) 68
DpnI GATC 7 cut(s) 320, 531, 714, 738, 746, 843, 939
DpnII GATC 7 cut(s) 318, 529, 712, 736, 744, 841, 937
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
EciI GGCGGA 1 cut(s) 840
Eco130I CCWWGG 1 cut(s) 459
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 381
EcoO109I RGGNCCY 2 cut(s) 346, 381
EcoRII CCWGG 2 cut(s) 349, 636
EcoT14I CCWWGG 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 1024
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 2 cut(s) 446, 536
FaiI YATR 6 cut(s) 444, 534, 575, 614, 912, 981
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 1 cut(s) 500
FatI CATG 2 cut(s) 442, 532
FbaI TGATCA 2 cut(s) 529, 841
Fnu4HI GCNGC 8 cut(s) 10, 13, 16, 502, 600, 603, 1044, 1064
FokI GGATG 2 cut(s) 33, 107
Fsp4HI GCNGC 8 cut(s) 10, 13, 16, 502, 600, 603, 1044, 1064
FspBI CTAG 2 cut(s) 1007, 1011
GlaI GCGC 2 cut(s) 335, 337
GluI GCNGC 8 cut(s) 10, 13, 16, 502, 600, 603, 1044, 1064
GsaI CCCAGC 1 cut(s) 884
HaeIII GGCC 2 cut(s) 347, 578
HapII CCGG 2 cut(s) 570, 653
HhaI GCGC 2 cut(s) 336, 338
Hin1II CATG 2 cut(s) 446, 536
Hin6I GCGC 2 cut(s) 334, 336
HinP1I GCGC 2 cut(s) 334, 336
HinfI GANTC 9 cut(s) 42, 88, 101, 221, 524, 671, 785, 830, 976
HpaII CCGG 2 cut(s) 570, 653
HphI GGTGA 3 cut(s) 448, 569, 861
Hpy188I TCNGA 9 cut(s) 30, 106, 472, 520, 529, 676, 744, 784, 790
Hpy188III TCNNGA 5 cut(s) 274, 443, 533, 827, 1058
Hpy99I CGWCG 1 cut(s) 810
HpyAV CCTTC 3 cut(s) 25, 749, 969
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 4 cut(s) 210, 403, 808, 996
HpyCH4V TGCA 8 cut(s) 141, 179, 602, 620, 706, 774, 1022, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 333, 344
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 4 cut(s) 210, 403, 808, 996
Hsp92II CATG 2 cut(s) 446, 536
HspAI GCGC 2 cut(s) 334, 336
KpnI GGTACC 1 cut(s) 570
Ksp22I TGATCA 2 cut(s) 529, 841
Kzo9I GATC 7 cut(s) 318, 529, 712, 736, 744, 841, 937
LguI GCTCTTC 1 cut(s) 795
LmnI GCTCC 4 cut(s) 290, 331, 359, 649
Lsp1109I GCAGC 7 cut(s) 21, 24, 27, 586, 614, 1030, 1075
LweI GCATC 3 cut(s) 649, 697, 1031
MaeI CTAG 2 cut(s) 1007, 1011
MaeII ACGT 4 cut(s) 210, 403, 808, 996
MaeIII GTNAC 2 cut(s) 716, 867
MalI GATC 7 cut(s) 320, 531, 714, 738, 746, 843, 939
MboI GATC 7 cut(s) 318, 529, 712, 736, 744, 841, 937
MboII GAAGA 6 cut(s) 97, 328, 431, 436, 731, 812
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 7 cut(s) 24, 466, 775, 941, 1027, 1053, 1072
MlyI GAGTC 2 cut(s) 230, 824
MmeI TCCRAC 1 cut(s) 312
Mph1103I ATGCAT 1 cut(s) 1024
MseI TTAA 2 cut(s) 399, 696
MslI CAYNNNNRTG 1 cut(s) 915
MspI CCGG 2 cut(s) 570, 653
MspR9I CCNGG 3 cut(s) 351, 638, 654
Mva1269I GAATGC 1 cut(s) 641
MvaI CCWGG 2 cut(s) 351, 638
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 3 cut(s) 15, 333, 344
NciI CCSGG 1 cut(s) 654
NdeII GATC 7 cut(s) 318, 529, 712, 736, 744, 841, 937
NheI GCTAGC 1 cut(s) 1010
NlaIII CATG 2 cut(s) 446, 536
NlaIV GGNNCC 4 cut(s) 348, 355, 568, 651
NmuCI GTSAC 1 cut(s) 867
NsiI ATGCAT 1 cut(s) 1024
PagI TCATGA 2 cut(s) 442, 532
PauI GCGCGC 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 795
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 641
PfeI GAWTC 7 cut(s) 42, 88, 101, 524, 671, 785, 976
PinAI ACCGGT 1 cut(s) 569
PkrI GCNGC 8 cut(s) 11, 14, 17, 503, 601, 604, 1045, 1065
PleI GAGTC 2 cut(s) 229, 824
PpsI GAGTC 2 cut(s) 229, 824
Ppu21I YACGTR 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 349, 636
PspFI CCCAGC 1 cut(s) 880
PspGI CCWGG 2 cut(s) 349, 636
PspN4I GGNNCC 4 cut(s) 348, 355, 568, 651
PspPI GGNCC 2 cut(s) 346, 381
PspPPI RGGWCCY 1 cut(s) 381
PstI CTGCAG 3 cut(s) 143, 604, 1048
PteI GCGCGC 1 cut(s) 334
RsaI GTAC 6 cut(s) 209, 242, 248, 269, 311, 568
RsaNI GTAC 6 cut(s) 208, 241, 247, 268, 310, 567
RseI CAYNNNNRTG 1 cut(s) 915
SapI GCTCTTC 1 cut(s) 795
SaqAI TTAA 2 cut(s) 399, 696
SatI GCNGC 8 cut(s) 10, 13, 16, 502, 600, 603, 1044, 1064
Sau3AI GATC 7 cut(s) 318, 529, 712, 736, 744, 841, 937
Sau96I GGNCC 2 cut(s) 346, 381
SchI GAGTC 2 cut(s) 230, 824
ScrFI CCNGG 3 cut(s) 351, 638, 654
SduI GDGCHC 1 cut(s) 281
SfaNI GCATC 3 cut(s) 649, 697, 1031
SfcI CTRYAG 4 cut(s) 139, 297, 600, 1044
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 915
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 7 cut(s) 24, 466, 775, 941, 1027, 1053, 1072
SsiI CCGC 3 cut(s) 502, 851, 863
SspMI CTAG 2 cut(s) 1007, 1011
StyD4I CCNGG 3 cut(s) 349, 636, 652
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 4 cut(s) 213, 406, 811, 999
TaqI TCGA 1 cut(s) 40
TasI AATT 7 cut(s) 24, 466, 775, 941, 1027, 1053, 1072
TatI WGTACW 2 cut(s) 246, 267
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 7 cut(s) 42, 88, 101, 524, 671, 785, 976
Tru1I TTAA 2 cut(s) 399, 696
Tru9I TTAA 2 cut(s) 399, 696
TscAI CASTG 2 cut(s) 174, 242
TseFI GTSAC 1 cut(s) 867
TseI GCWGC 7 cut(s) 9, 12, 15, 599, 602, 1043, 1063
Tsp45I GTSAC 1 cut(s) 867
TspDTI ATGAA 4 cut(s) 98, 431, 933, 1017
TspRI CASTG 2 cut(s) 174, 242
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 1 cut(s) 466
XspI CTAG 2 cut(s) 1007, 1011
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.