Rorug01G0290600
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000639
Physical Location & Seq
Reverse (-)
40636377 .. 40639609
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0290600.1

Sequence Viewer

Length: 1386 bp
ATGAAAGACAACCCAAAAGACCCAGAAAACCTCTACTCAACATGGACCTTCCCAAAGGTAACAATATGCTTCCTCCTCTTGATCTCTTTCAGCTACATCTCTTACTCTCTGAAATTTTTCCACCCATATTTATGTACCCAACAATCTCAATCTCTTAATTTCCAATCCCATTTTTCCACACCCCAATCAGCTGATCCAAACCCTCCAACGTCCCAAGAACACAAAACAAACATCTCCCACATCGTTTTTGGCATTGCAGCCTCAGCCGATCTCTGGCATCACAGAAAGAACTACATCAAGCTCTGGTGGAGACCAGACCAAATGAGAGGCCATGTTTGGCTAGACCAACCCGTAAAAACAGACCCCAAATCCGATCACAACCTTTTACCGCTGTTCAAAATATCAGGAGACACTTCCGGCTTCAAGTACACAAACCCAAAAGGCCACCACTCGGCTATAAGAATCTCCCGTATTGTTTCCGAGAGTTTCAGGCTGGGGATGAAGAATGTGAGGTGGTTTGTGCTGGGGGACGACGACACCGTTTTCGTGACCGAGAATCTGGTCAGGGTTTTGCAGAAGTATGATCATAACCAGTTTTACTATATCGGAGGATCGTCGGAGAGTCACTTGCAGAACATAAAGTTTTCGTATAATATGGCTTATGGTGGAGGTGGGATTGCTATAAGTTACTCTTTAGCAAAAGCCCTTGAGAAAATGCAGGACAGTTGTATTCAGAGGTATCCTGGTTTGTACGGCTCCGATGATCGGCTTCAGGCTTGTATGGCTGAGATTGGTGTCCCTCTCACCAGAGAAAAAGGGTTTCATCAGTTTGATGTATATGGGAGCTTGTTCGGCCTCCTAGCAGCTCATCCAATCGCACCCCTAGTGTCACTACACCACCTAGATGTGGTTGAACCTATATTCCCGGATATGGATCGGATCCATGCCTTACAACGGCTCGAGGCTCCAACGAAGCTCGACTCAGCGGGGCTTGCGCAACAATCCATTTGCTACGATATCAATCGGTCCTGGACCATATCTGTTTCCTGGGGCTACGCAGTTCAAATATTTCAGGGTATTTCCTCGGCTCGAGAAATGGAACTGCCACTCAGGACCTTCCTCAATTGGTACAAGAGAGCTGATCATACTGCCTACACATTCAATACGGCCTCGGTCAATAGGCACGCATGTCAAGTACCGTTTGTCTATTACTTATCTAATGCTTTCTACAATAGAACTACAAATCAAACAACCACCGAGTATGTTCAACATCAAACACGGATGCCAGAATGCAATTGGAAGATGGCAAATCCCTCCCGGATTCACAAAGTTCACGTCCATAAATCCTCCGACCCGCATTTATGGGACAAGAGTATTCACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

461

Amino Acids

53.09

Weight (kDa)

8.75

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 152 - 276 8.3e-16 Fringe-like
DUF604 PF04646 211 - 458 2.5e-109 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 996
AciI CCGC 3 cut(s) 389, 986, 1355
AclWI GGATC 5 cut(s) 188, 619, 934, 942, 947
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 755
AfaI GTAC 5 cut(s) 136, 428, 752, 1130, 1197
AfiI CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
AgsI TTSAA 6 cut(s) 397, 424, 914, 1064, 1162, 1268
AjiI CACGTC 1 cut(s) 1336
AjnI CCWGG 3 cut(s) 742, 1028, 1046
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
AluBI AGCT 7 cut(s) 93, 191, 301, 846, 866, 976, 1139
AluI AGCT 7 cut(s) 93, 191, 301, 846, 866, 976, 1139
Alw26I GTCTC 2 cut(s) 304, 402
AlwI GGATC 5 cut(s) 188, 619, 934, 942, 947
Ama87I CYCGRG 2 cut(s) 959, 1089
AoxI GGCC 4 cut(s) 328, 442, 853, 1167
ApeKI GCWGC 2 cut(s) 257, 863
ApoI RAATTY 1 cut(s) 113
ArsI GACNNNNNNTTYG 4 cut(s) 527, 559, 1320, 1352
Asp700I GAANNNNTTC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 997
AspS9I GGNCC 4 cut(s) 45, 1026, 1032, 1113
AsuC2I CCSGG 2 cut(s) 926, 1318
AsuHPI GGTGA 1 cut(s) 796
AvaI CYCGRG 2 cut(s) 959, 1089
AvaII GGWCC 4 cut(s) 45, 1026, 1032, 1113
BamHI GGATCC 1 cut(s) 939
BbvCI CCTCAGC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 269, 875
BccI CCATC 1 cut(s) 1297
BceAI ACGGC 3 cut(s) 769, 971, 1182
BciT130I CCWGG 3 cut(s) 744, 1030, 1048
BciVI GTATCC 1 cut(s) 750
BclI TGATCA 2 cut(s) 583, 1141
BcnI CCSGG 2 cut(s) 926, 1318
BcoDI GTCTC 2 cut(s) 304, 402
BfaI CTAG 4 cut(s) 341, 860, 884, 902
BfuI GTATCC 1 cut(s) 750
BisI GCNGC 2 cut(s) 258, 864
BlsI GCNGC 2 cut(s) 259, 865
Bme1390I CCNGG 5 cut(s) 744, 926, 1030, 1048, 1318
Bme18I GGWCC 4 cut(s) 45, 1026, 1032, 1113
BmeT110I CYCGRG 2 cut(s) 959, 1089
BmgBI CACGTC 1 cut(s) 1336
BmgT120I GGNCC 4 cut(s) 45, 1026, 1032, 1113
BmiI GGNNCC 3 cut(s) 757, 941, 966
BmrFI CCNGG 5 cut(s) 744, 926, 1030, 1048, 1318
BmsI GCATC 2 cut(s) 286, 1272
Bpu10I CCTNAGC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 2 cut(s) 926, 1318
BsaBI GATNNNNATC 2 cut(s) 933, 1020
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 3 cut(s) 1047, 1083, 1170
Bsc4I CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
Bse1I ACTGG 1 cut(s) 592
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 2 cut(s) 933, 1020
BseBI CCWGG 3 cut(s) 744, 1030, 1048
BseDI CCNNGG 3 cut(s) 1047, 1083, 1170
BseGI GGATG 3 cut(s) 504, 868, 1287
BseJI GATNNNNATC 2 cut(s) 933, 1020
BseLI CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 4 cut(s) 276, 777, 996, 1123
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 269, 875
BseYI CCCAGC 2 cut(s) 493, 523
BshFI GGCC 4 cut(s) 330, 444, 855, 1169
BsiHKCI CYCGRG 2 cut(s) 959, 1089
BsiSI CCGG 3 cut(s) 417, 926, 1318
BslFI GGGAC 4 cut(s) 196, 542, 782, 1379
BslI CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
BsmAI GTCTC 2 cut(s) 304, 402
BsmFI GGGAC 4 cut(s) 196, 542, 782, 1379
BsmI GAATGC 1 cut(s) 1295
BsnI GGCC 4 cut(s) 330, 444, 855, 1169
Bso31I GGTCTC 1 cut(s) 304
BsoBI CYCGRG 2 cut(s) 959, 1089
BspACI CCGC 3 cut(s) 389, 986, 1355
BspANI GGCC 4 cut(s) 330, 444, 855, 1169
BspCNI CTCAG 4 cut(s) 275, 778, 995, 1122
BspLI GGNNCC 3 cut(s) 757, 941, 966
BspPI GGATC 5 cut(s) 188, 619, 934, 942, 947
BspTNI GGTCTC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 3 cut(s) 1047, 1083, 1170
Bst2UI CCWGG 3 cut(s) 744, 1030, 1048
Bst4CI ACNGT 3 cut(s) 541, 725, 1200
BstC8I GCNNGC 2 cut(s) 993, 1185
BstDEI CTNAG 4 cut(s) 262, 786, 982, 1109
BstF5I GGATG 3 cut(s) 504, 868, 1287
BstHHI GCGC 1 cut(s) 997
BstMAI GTCTC 2 cut(s) 304, 402
BstMWI GCNNNNNNNGC 4 cut(s) 263, 782, 852, 992
BstNI CCWGG 3 cut(s) 744, 1030, 1048
BstNSI RCATGY 1 cut(s) 1191
BstSCI CCNGG 5 cut(s) 742, 924, 1028, 1046, 1316
BstV1I GCAGC 2 cut(s) 269, 875
BstX2I RGATCY 1 cut(s) 939
BstYI RGATCY 1 cut(s) 939
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 4 cut(s) 330, 444, 855, 1169
BtrI CACGTC 1 cut(s) 1336
BtsCI GGATG 3 cut(s) 504, 868, 1287
Cac8I GCNNGC 2 cut(s) 993, 1185
CfoI GCGC 1 cut(s) 997
Cfr13I GGNCC 4 cut(s) 45, 1026, 1032, 1113
Csp6I GTAC 5 cut(s) 135, 427, 751, 1129, 1196
CviAII CATG 4 cut(s) 42, 332, 944, 1188
CviQI GTAC 5 cut(s) 135, 427, 751, 1129, 1196
DdeI CTNAG 4 cut(s) 262, 786, 982, 1109
Eco31I GGTCTC 1 cut(s) 304
Eco32I GATATC 1 cut(s) 1018
Eco47I GGWCC 4 cut(s) 45, 1026, 1032, 1113
Eco57I CTGAAG 1 cut(s) 755
Eco88I CYCGRG 2 cut(s) 959, 1089
EcoO109I RGGNCCY 1 cut(s) 1113
EcoRII CCWGG 3 cut(s) 742, 1028, 1046
EcoRV GATATC 1 cut(s) 1018
FaeI CATG 4 cut(s) 45, 335, 947, 1191
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FaqI GGGAC 4 cut(s) 196, 542, 782, 1379
FatI CATG 4 cut(s) 41, 331, 943, 1187
FauI CCCGC 2 cut(s) 979, 1362
FbaI TGATCA 2 cut(s) 583, 1141
Fnu4HI GCNGC 2 cut(s) 258, 864
FokI GGATG 3 cut(s) 511, 855, 1294
Fsp4HI GCNGC 2 cut(s) 258, 864
FspBI CTAG 4 cut(s) 341, 860, 884, 902
FspI TGCGCA 1 cut(s) 996
GlaI GCGC 1 cut(s) 996
GluI GCNGC 2 cut(s) 258, 864
GsaI CCCAGC 2 cut(s) 497, 527
HaeIII GGCC 4 cut(s) 330, 444, 855, 1169
HapII CCGG 3 cut(s) 417, 926, 1318
HhaI GCGC 1 cut(s) 997
Hin1II CATG 4 cut(s) 45, 335, 947, 1191
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HinfI GANTC 5 cut(s) 462, 556, 622, 980, 1321
HpaII CCGG 3 cut(s) 417, 926, 1318
HphI GGTGA 1 cut(s) 796
Hpy166II GTNNAC 2 cut(s) 429, 1333
Hpy188I TCNGA 9 cut(s) 111, 373, 481, 608, 619, 735, 760, 939, 1351
Hpy188III TCNNGA 5 cut(s) 79, 405, 547, 1091, 1111
Hpy8I GTNNAC 2 cut(s) 429, 1333
Hpy99I CGWCG 2 cut(s) 536, 619
HpyAV CCTTC 2 cut(s) 58, 1126
HpyCH4III ACNGT 3 cut(s) 541, 725, 1200
HpyCH4IV ACGT 2 cut(s) 209, 1335
HpyCH4V TGCA 5 cut(s) 257, 574, 631, 718, 1293
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 782, 852, 992
HpyF3I CTNAG 4 cut(s) 262, 786, 982, 1109
HpySE526I ACGT 2 cut(s) 209, 1335
Hsp92II CATG 4 cut(s) 45, 335, 947, 1191
HspAI GCGC 1 cut(s) 995
Ksp22I TGATCA 2 cut(s) 583, 1141
LmnI GCTCC 3 cut(s) 761, 843, 970
Lsp1109I GCAGC 2 cut(s) 269, 875
LweI GCATC 2 cut(s) 286, 1272
MaeI CTAG 4 cut(s) 341, 860, 884, 902
MaeII ACGT 2 cut(s) 209, 1335
MaeIII GTNAC 5 cut(s) 58, 547, 623, 686, 888
MboII GAAGA 2 cut(s) 514, 1312
MfeI CAATTG 2 cut(s) 1123, 1294
MflI RGATCY 1 cut(s) 939
MluCI AATT 4 cut(s) 113, 157, 1123, 1294
MlyI GAGTC 2 cut(s) 631, 974
MmeI TCCRAC 4 cut(s) 230, 597, 992, 1374
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 2 cut(s) 130, 903
MspA1I CMGCKG 3 cut(s) 191, 391, 986
MspI CCGG 3 cut(s) 417, 926, 1318
MspR9I CCNGG 5 cut(s) 744, 926, 1030, 1048, 1318
MunI CAATTG 2 cut(s) 1123, 1294
Mva1269I GAATGC 1 cut(s) 1295
MvaI CCWGG 3 cut(s) 744, 1030, 1048
MwoI GCNNNNNNNGC 4 cut(s) 263, 782, 852, 992
NciI CCSGG 2 cut(s) 926, 1318
NlaIII CATG 4 cut(s) 45, 335, 947, 1191
NlaIV GGNNCC 3 cut(s) 757, 941, 966
NmeAIII GCCGAG 2 cut(s) 431, 1064
NmuCI GTSAC 3 cut(s) 547, 623, 888
NsbI TGCGCA 1 cut(s) 996
NspI RCATGY 1 cut(s) 1191
PaeR7I CTCGAG 2 cut(s) 959, 1089
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PctI GAATGC 1 cut(s) 1295
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 3 cut(s) 462, 556, 1321
PfoI TCCNGGA 3 cut(s) 924, 1028, 1316
PkrI GCNGC 2 cut(s) 259, 865
PleI GAGTC 2 cut(s) 630, 974
PpsI GAGTC 2 cut(s) 630, 974
PpuMI RGGWCCY 1 cut(s) 1113
Psp5II RGGWCCY 1 cut(s) 1113
Psp6I CCWGG 3 cut(s) 742, 1028, 1046
PspFI CCCAGC 2 cut(s) 493, 523
PspGI CCWGG 3 cut(s) 742, 1028, 1046
PspN4I GGNNCC 3 cut(s) 757, 941, 966
PspPI GGNCC 4 cut(s) 45, 1026, 1032, 1113
PspPPI RGGWCCY 1 cut(s) 1113
PspXI VCTCGAGB 1 cut(s) 959
PsuI RGATCY 1 cut(s) 939
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 5 cut(s) 136, 428, 752, 1130, 1197
RsaNI GTAC 5 cut(s) 135, 427, 751, 1129, 1196
RseI CAYNNNNRTG 2 cut(s) 130, 903
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 258, 864
Sau96I GGNCC 4 cut(s) 45, 1026, 1032, 1113
SchI GAGTC 2 cut(s) 631, 974
ScrFI CCNGG 5 cut(s) 744, 926, 1030, 1048, 1318
SfaNI GCATC 2 cut(s) 286, 1272
Sfr274I CTCGAG 2 cut(s) 959, 1089
SinI GGWCC 4 cut(s) 45, 1026, 1032, 1113
SlaI CTCGAG 2 cut(s) 959, 1089
SmiMI CAYNNNNRTG 2 cut(s) 130, 903
SmlI CTYRAG 3 cut(s) 707, 959, 1089
SmoI CTYRAG 3 cut(s) 707, 959, 1089
Sse9I AATT 4 cut(s) 113, 157, 1123, 1294
SsiI CCGC 3 cut(s) 389, 986, 1355
SspI AATATT 1 cut(s) 1068
SspMI CTAG 4 cut(s) 341, 860, 884, 902
StyD4I CCNGG 5 cut(s) 742, 924, 1028, 1046, 1316
TaaI ACNGT 3 cut(s) 541, 725, 1200
TaiI ACGT 2 cut(s) 212, 1338
TaqI TCGA 3 cut(s) 960, 978, 1090
TaqII GACCGA 3 cut(s) 566, 1014, 1162
TasI AATT 4 cut(s) 113, 157, 1123, 1294
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 3 cut(s) 462, 556, 1321
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 3 cut(s) 547, 623, 888
TseI GCWGC 2 cut(s) 257, 863
Tsp45I GTSAC 3 cut(s) 547, 623, 888
TspDTI ATGAA 3 cut(s) 17, 515, 812
TspGWI ACGGA 1 cut(s) 1294
VpaK11BI GGWCC 4 cut(s) 45, 1026, 1032, 1113
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 1191
XcmI CCANNNNNNNNNTGG 2 cut(s) 245, 1293
XhoI CTCGAG 2 cut(s) 959, 1089
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 4 cut(s) 341, 860, 884, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.